Halophilic archaeon: Halar_3478
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Entry
Halar_3478 CDS
T01603
Name
(GenBank) nucleic acid binding OB-fold tRNA/helicase-type
KO
K07466
replication factor A1
Organism
hah
Halophilic archaeon
Pathway
hah03030
DNA replication
hah03420
Nucleotide excision repair
hah03430
Mismatch repair
hah03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
hah00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
Halar_3478
03420 Nucleotide excision repair
Halar_3478
03430 Mismatch repair
Halar_3478
03440 Homologous recombination
Halar_3478
03460 Fanconi anemia pathway
Halar_3478
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
hah03000
]
Halar_3478
03032 DNA replication proteins [BR:
hah03032
]
Halar_3478
03400 DNA repair and recombination proteins [BR:
hah03400
]
Halar_3478
Transcription factors [BR:
hah03000
]
Eukaryotic type
Zinc finger
Cys2His2 others
Halar_3478
DNA replication proteins [BR:
hah03032
]
Eukaryotic type
DNA Replication Elongation Factors
RPA (replication protein A)
Halar_3478
DNA repair and recombination proteins [BR:
hah03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
RPA (replication factor A)
Halar_3478
MMR (mismatch excision repair)
Halar_3478
DSBR (double strand breaks repair)
HR (homologous recombination)
Halar_3478
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
tRNA_anti-codon
CDC24_OB3
REPA_OB_2
Ssb-like_OB
Neopullulanase-like_C
Motif
Other DBs
NCBI-ProteinID:
AEN07074
LinkDB
All DBs
Position
2676494..2677927
Genome browser
AA seq
477 aa
AA seq
DB search
MSAIEDVHEELDADVTSEEFAEMVAEKVEEMGGLADDETAAMLVAHELEDEGGEVEGIAD
IEPGMDEVKFVAKIISIGERRTFERDGDQEDGQVVNAEVADETGRIRLSLWDEMAEGAIE
TLEEGEVLRIAGRPKEGYNGVEVSADKAEVEPGMEIEVSLSDSYTVEALSMGLSDVTLVG
ELLDVDDDYRTFDRDDGSEGRVANVAIGDETGRIRVTLWDEGTDLLEVLDAGEVVEVVDG
YVREREGDLELHVGSRGTIEEVDEDVQFVPDTSDIADVEMGDTVDIAGGIIETDEKRTFD
RDDGSQGQVRNVRVRDETGDIRVALWGGKADRDIELADRVAFTDVEIQDGWQDELEASAG
WQSTVSLLEGTADVSGGDSGSEGGQQEKTPAGQGGLSSFGGDGDDDTPTSTPATGGETVD
GDEAEFTGTVVQSGSPVVLDNGEETRSVETSESLTLGQEVTVRGVEHDGRIDADEVF
NT seq
1434 nt
NT seq
+upstream
nt +downstream
nt
atgagtgccatcgaggacgtccacgaggagctcgatgcggacgtcacctccgaggagttc
gcggagatggtggcggagaaagtcgaggagatgggcgggctggctgacgacgagacggcg
gcgatgctggtcgcccacgaactcgaggacgagggcggggaagtcgaaggcatcgctgac
atcgaaccagggatggacgaggtgaagttcgtcgccaaaatcatctccattggcgaacgc
cgcacgttcgagcgcgacggcgaccaagaggacggccaggtcgtcaacgccgaagtcgcc
gacgaaacgggccgtatccgactctcgctctgggacgagatggccgagggagcgatcgag
accctcgaggagggcgaggtgcttcgcattgcgggccgcccgaaagagggctacaacggc
gtggaggtctcggcggacaaggctgaggtcgaacctggaatggaaatcgaggtatcgctc
tcggacagctacaccgtcgaagcgctctcgatggggctctcggacgtcaccctcgttggc
gaactgctcgatgtggacgacgactaccggacgttcgaccgtgatgacggctcagaaggc
cgtgtcgccaacgtcgcgatcggcgatgagaccggccgaatccgggtcacgctctgggac
gaggggaccgacctgctcgaggtactcgatgccggcgaggtcgtcgaagtcgtcgacggc
tacgtgcgcgaacgcgagggtgacctcgaactccacgtcggctcccgtgggaccatcgag
gaagtcgacgaggacgtccagttcgtccccgacacgagcgacatcgcggacgtggagatg
ggcgacactgtcgatatcgcggggggcatcatcgagaccgacgagaagcgcaccttcgac
cgcgacgacggttcgcaggggcaggtccgcaacgtcagggtgcgggacgaaaccggcgac
atccgggtcgcgctctggggcgggaaagccgaccgcgatatcgaactcgccgaccgcgtc
gcgttcaccgacgtggagattcaggacggttggcaggacgaactcgaggcgtccgctggc
tggcagtcgaccgtgagcctgctggaagggacagccgacgtctcgggtggcgacagcggg
agtgagggcggtcagcaggagaaaacaccggctggacagggaggcctctcctcattcggt
ggcgacggcgacgacgacaccccgacgagcacaccagcgacgggcggggaaaccgtcgat
ggagacgaagccgagttcactggaacggtggtgcagtccggcagccccgtcgtgctcgac
aacggcgaggagacccggagcgtcgagaccagtgagagcctcacgctgggccaggaggtg
acggtgcggggcgtcgaacacgacggccgcatcgacgccgacgaggtcttctga
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integrated database retrieval system
