Hahella sp. KA22: ENC22_00795
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Entry
ENC22_00795 CDS
T05793
Name
(GenBank) RtcB family protein
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
hahe
Hahella sp. KA22
Brite
KEGG Orthology (KO) [BR:
hahe00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
hahe03016
]
ENC22_00795
Enzymes [BR:
hahe01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
ENC22_00795
Transfer RNA biogenesis [BR:
hahe03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
ENC22_00795
Prokaryotic type
tRNA splicing ligases
ENC22_00795
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
Motif
Other DBs
NCBI-ProteinID:
AZZ95381
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All DBs
Position
complement(182909..184123)
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AA seq
404 aa
AA seq
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MPYEVTNVEKGVPIKSWTNGVPFEPEARKQLKNIASLPFIHKWVAAMPDVHLGKGATIGS
VIPTSGAIIPAAVGVDIGCGMMAVKTDVHATQLPDSLGALRSAIEAAIPHGRQPGRRDRG
SWHDIPEDVGARWTHELADRFKILCEKHPVLKNTNNVNHLGTLGTGNHFIEVCLDENNDV
WIMLHSGSRGVGNRIGEHFIKLAKKEMERFFVNLPDKDLAYLAEGTDYFNDYVHAVGWAQ
DFARINRQAMMQRALNVLAVTLNKPVIAELEAVNCHHNYVQKENHYGKNVWLTRKGAVSA
QEGQLGIIPGSMGARSYIVRGKGNAESFCSCSHGAGRVMSRTEAKKRVSVEEHARATAHV
ECRKDAAVVDETPSAYKDIDAVMAAQSDLVEVVHTLRQVVCVKG
NT seq
1215 nt
NT seq
+upstream
nt +downstream
nt
atgccctatgaagtgactaacgtagaaaaaggcgttccgatcaaaagctggaccaacggc
gttccattcgagccggaggcgcgcaagcaattgaaaaacattgcgtccttgccgttcatt
cataagtgggtggcggcgatgccggacgtgcacttaggtaagggcgcaaccatcggctct
gttattcccacttccggcgcgattattcccgccgcagtgggagtggatatcggttgcggc
atgatggcggtgaaaaccgacgtgcacgcaacgcaattgccggactctctgggagcgctg
cgtagcgcgatagaagcagcgataccccacggtcgccagccaggacgccgtgaccggggt
tcctggcatgatatcccggaggatgtaggcgctcgttggactcatgagttggcggatcgc
tttaaaatcctgtgcgaaaagcacccggttttgaaaaacaccaacaacgtgaaccacctg
ggaaccctgggaaccggtaaccacttcatcgaagtgtgtctggatgagaacaacgacgta
tggattatgctgcactccggttcccgcggcgttgggaatcgtatcggcgagcatttcatc
aagctggcgaaaaaggaaatggagcgtttcttcgtaaacctgccggataaagatctggcc
tatctggcggagggaaccgattacttcaacgactacgtgcatgccgttggctgggcgcag
gattttgcgcgcatcaaccgtcaggcgatgatgcagcgggcgctgaacgtcttggcggtt
acgttgaacaagccggtaatcgccgagctggaagcggtgaactgtcaccataactatgtg
cagaaggaaaaccactacgggaaaaacgtgtggttaacccgtaaaggcgcagtaagcgca
caggaaggccagctgggaattatcccaggcagcatgggagcccgctcctacatcgtgcgc
ggtaaaggcaacgcggaaagcttctgtagctgtagccacggcgcaggaagagtgatgtct
cgaaccgaggcgaaaaagcgcgtatccgtagaagagcacgctcgcgccacagcgcatgtg
gaatgccgaaaagacgcggcggtagtggacgaaacgccttccgcttacaaagacatcgac
gccgtgatggcggcgcagtccgacctggttgaagtcgtgcatacgctgagacaggtggtt
tgcgtaaaaggttga
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