Hahella sp. KA22: ENC22_01335
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Entry
ENC22_01335 CDS
T05793
Symbol
rho
Name
(GenBank) transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
hahe
Hahella sp. KA22
Pathway
hahe03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
hahe00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
ENC22_01335 (rho)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
hahe03021
]
ENC22_01335 (rho)
03019 Messenger RNA biogenesis [BR:
hahe03019
]
ENC22_01335 (rho)
Transcription machinery [BR:
hahe03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
ENC22_01335 (rho)
Messenger RNA biogenesis [BR:
hahe03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
ENC22_01335 (rho)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
Rho_N
OB_RNB
NACHT
AAA
Fungal_virus_P2_C
AAA_22
S1CSD-TOTE-2
Spore_III_AA
AAA_25
DUF3086
ResIII
Motif
Other DBs
NCBI-ProteinID:
AZZ89892
LinkDB
All DBs
Position
309222..310484
Genome browser
AA seq
420 aa
AA seq
DB search
MNLTELKKKPVPELLTIAEEMGLENMARSRKQDVIFSILKKHAKSGEDIYGDGVLEILQD
GFGFLRSADSSYLAGPDDIYVSPSQIRRFNLRTGDTIAGKIRPPKDGERYFALLKVNEIN
FDKPENARNKILFENLTPLFPQERLRLEAGNGSTEDLSARILDLVAPIGKGQRGLIVSPP
KAGKTLLMQNIAQSITRNNPETHLMVLLIDERPEEVTEMQRTVRGEVVASTFDEPPARHV
QVAEMVIEKAKRLVEHKKDVVILLDSITRLARAYNTIIPSSGKVLTGGVDAHALERPKRF
FGAARNVEEGGSLTIVATALIDTGSKMDEVIYEEFKGTGNLEVHLDRRISEKRVFPAINI
RRSGTRREELLMSEEELQRVWILRKLLHSMEDDIAAVEFLLDKLKDTKTNDEFFQAMKKR
NT seq
1263 nt
NT seq
+upstream
nt +downstream
nt
atgaatcttactgaattaaaaaagaaacccgttcctgagttattgaccatcgccgaagaa
atgggcctggaaaatatggctcgctcccgcaagcaggatgtgattttcagtattttgaaa
aagcacgccaaaagcggcgaagacatctacggcgatggcgttctggaaatcctgcaggat
ggcttcggcttcttgcgttccgcggatagttcctacttggccggccctgacgacatctac
gtctcacccagtcaaatccgccgtttcaacctcagaacaggcgatacaatcgccggtaag
attcgaccgccgaaagacggcgagcgttatttcgcactgttgaaagtcaatgaaatcaac
ttcgacaaacctgaaaacgcccgcaacaaaatcctgtttgaaaacctgacgcctctgttc
ccacaggaaagactgcgtctggaggccggcaacggcagtacggaagatttatcagcgcgt
attctggatttggtcgcgccaatcggtaaagggcagcgcggtttgatcgtatcgccgccg
aaagccggtaagaccctccttatgcagaacatcgcccagtccatcacccgcaacaatccc
gaaacccatctaatggttctgctgatcgacgaacgccctgaagaggtgaccgagatgcag
cgcaccgtacgtggtgaagtggttgcgagcaccttcgacgagccgccggcccgtcacgtt
caggttgctgagatggttatcgaaaaagccaagcgtctggttgagcataaaaaagacgta
gtgatcctgttggactccatcactcgtctggcgcgcgcttacaacactattatcccgtcc
tccggcaaagtactgaccggtggtgtggacgcccatgcgctggaacgtcccaagcgcttt
ttcggcgctgcgcggaatgtcgaggaaggcggcagcctgaccatcgtcgcgacggcgttg
attgacactggctccaaaatggacgaagtgatttacgaagagttcaagggcaccggtaac
ctggaagtgcacttggaccgtagaatttctgaaaaacgcgtcttccctgcgattaacatc
cgtcgttccggcactcgtcgtgaagagctgctgatgtctgaggaagagctgcaaagagtg
tggattctgcgcaagctgctgcattctatggaagacgatatcgccgcggtggagttcctg
cttgataagttgaaggacaccaagaccaacgacgaattcttccaggccatgaaaaagcgc
taa
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