Hahella sp. KA22: ENC22_10100
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Entry
ENC22_10100 CDS
T05793
Name
(GenBank) ribonuclease E
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
hahe
Hahella sp. KA22
Pathway
hahe03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
hahe00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
ENC22_10100
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hahe03019
]
ENC22_10100
03009 Ribosome biogenesis [BR:
hahe03009
]
ENC22_10100
Enzymes [BR:
hahe01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
ENC22_10100
Messenger RNA biogenesis [BR:
hahe03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
ENC22_10100
Ribosome biogenesis [BR:
hahe03009
]
Prokaryotic type
rRNA processing factors
ENC22_10100
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
Motif
Other DBs
NCBI-ProteinID:
AZZ91534
LinkDB
All DBs
Position
complement(2255283..2258459)
Genome browser
AA seq
1058 aa
AA seq
DB search
MKRMLINATQPEELRVALVDGQKLYDLDIESGTREQKKSNIYKGKITRIEPSLEAAFVDF
GAERHGFLPLKEISREYFKSQPQKGGKMNIKDLLQEGQEIIIQVDKEERGNKGAALTTFI
SLAGRYLVLMPNNPRAGGISRRIEGDERDQLKDAMSGLTVPKDMGLIIRTAGVGRSSKEL
QRDLDYLLQFWDSIRHASDSKPAPFLIYQESNVVIRATRDYLRQDIGEVLIDHPQVHQDA
LNFVKAVMPNFENRIKLYQDDIPLFNRYQIESQIETAFQREVKLPSGGSIVIDPTEALVS
IDINSARATKGGDIEETALQTNLEAADEIARQLRLRDIGGLIVIDFIDMTPNKNQREVEN
RLKEALELDRARVQIGKISRFGLLEMSRQRLRPSLGETRNEMCPRCKGQGSIRGVESLAL
SVMRLIEEEAFKERTAEVRAICPISVATYLLNEKRENLAKTQKRHGVKVIVVPNSHMDTP
HFEVQRIRDDNANVSEISYNVKPEMEEKNPVESLLHKEIVRQEAAVKTIVPSSAPAAAPS
EEIGLLKRLRQKVSKMFSGEKKDSDLKITVAESPQASQDKDAGRRKVKVRDRQDGQRDNQ
RQDNRQAESRDGGQDNRRSNRGRNDDRNQRRNERNERNDGQKDRRQRDRDSSKGDTPREQ
RGRNESAKAESGSQEKSEFSRPRRDRSSGKPVPRPQRQDRPERQDKPEAQEKVAEEAAER
RTPDAAANIADEPVKSEIAKEVWNKSVEAITEAETTDSARPSQPKTEEKDAAPAQQSAQP
SEAVEPGKAPQERAAERPAKQLDADTRQRKHDVAEAKQQDASEGEQEKPARKARADNDPR
NKTRRPKRDAVEAKSVEAPKESQVEKPAARAKVSAPNADSPSVETKSKEDKKEERAAKAP
AVEQPKKEAHTEAKDKPDTATDKGAEKAASAPAAEKKASDKPVAAAAQSEEEPKRAFNDP
REVRKRIQAQKTQTSSNSTSASAPQPMAAPKAPEAATIESKVEAKEPEQPPKAPVPVVEK
TREEAEPPKSAPSAPEATVADVKAEDKPSSQDSKASQA
NT seq
3177 nt
NT seq
+upstream
nt +downstream
nt
atgaagcgaatgttgatcaacgctactcaaccagaagagttgcgtgtagccctcgttgac
ggacaaaaactgtacgacctggacattgagtccggcacccgcgagcaaaaaaaatccaat
atctacaaaggcaagattacccgcatagagcccagccttgaggccgccttcgtagatttc
ggcgcagagcgccacggtttcctgcccctgaaagaaatttcccgcgaatacttcaagagt
cagccgcaaaaaggcggcaagatgaacatcaaggatttgctgcaggaaggtcaggaaatc
attatccaggtggacaaagaagagcgtggcaacaaaggcgcagcactcacgacctttatc
agcctggctggccgctatttggtgctaatgccaaacaaccctcgtgcgggcggcatctct
cgtcgtattgaaggcgatgaacgcgaccaattgaaagacgccatgtccggcctgacagtt
cccaaagacatgggactgattatccgcactgcaggagttggtcgctcctccaaggagctg
caaagagacctggactacctgctgcaattctgggactccattcgtcacgcatcggatagc
aagccagctcctttcctgatctatcaggagagcaatgtagttatccgcgccactcgcgac
tacttacgtcaggatattggcgaagttttaatcgatcatccacaagtgcatcaggacgcg
cttaactttgtaaaagcggtgatgccgaacttcgaaaaccgcatcaagctgtatcaggat
gatatcccgctattcaatcgctaccagattgaaagccagatcgagaccgcgttccaaagg
gaagtaaaactgccatctggcggctctattgttatcgaccctaccgaagccctggtttct
atcgacatcaactctgctcgcgccaccaaaggcggcgacattgaggaaactgcgctgcaa
accaatctggaagcagcggacgagatcgcccggcaactacgcctgcgcgacattggcggc
ctgatcgttatcgactttatcgatatgacgcccaacaagaaccagcgcgaggtggagaac
cgcctgaaagaagcactggagttggaccgcgctcgcgtgcaaatcggcaaaatttcccgc
ttcggcttactggaaatgtcgcgccagcgtttgcgcccatcattaggcgaaacccgcaac
gaaatgtgcccgcgctgtaaaggccagggctcaattcgcggagtcgagtctcttgcccta
tccgtcatgcgcctgatcgaagaggaagcatttaaagagcgtacggcggaagtccgcgca
atatgccctatcagcgtcgccacatacctacttaacgaaaaacgcgagaacttggccaaa
acgcaaaagcgtcatggcgtaaaagtgattgtggtgcccaactcgcatatggacacccct
catttcgaagttcagcgcatccgggatgacaacgccaatgtcagcgaaatcagctacaac
gttaagcccgagatggaagagaaaaacccggttgaaagcctgctgcacaaagaaattgta
cgccaggaagccgcggtaaaaactattgttccaagctcagcgcctgccgccgcgccaagc
gaagaaattggcctactgaaacgtctgcgacagaaagtgtcaaaaatgttctccggcgag
aagaaggacagcgatctcaagatcactgttgcagagtctccgcaagcgtcgcaagacaaa
gacgctggccgcagaaaagttaaagtacgtgaccgccaggatggccaacgcgacaatcaa
cgccaggacaaccgtcaagccgaatcccgagatggcggacaggataatcgtcgcagcaac
cgtggccgcaatgacgaccgcaaccagcgccgcaacgaacgcaatgagcgtaacgacgga
cagaaagatagacgtcaacgtgatcgcgactccagcaaaggcgacactccgcgtgagcaa
agaggccgcaatgaatcagcgaaagcagagtcaggcagccaggaaaagtcggagtttagt
cgcccgagacgcgaccgctcctccggcaagccagttcctcgcccacagcgccaggataga
cctgagcgccaagacaagcccgaagctcaggaaaaagtagccgaagaggccgcagaacgt
cgcactcctgacgcagccgccaacatcgcagatgagcccgtaaagtctgaaatcgctaaa
gaggtgtggaacaaatctgtagaagctatcactgaagcagaaaccaccgacagcgcgcgc
ccatcgcagcccaaaacggaagaaaaagacgcagcgcctgctcagcagtcagcacagccc
agtgaagccgtcgagcctggcaaagcaccacaggaacgcgcagcagagcggccggcgaaa
cagctcgatgcagacacacgtcaacgcaaacacgatgtcgccgaggccaaacagcaggac
gcaagcgaaggcgaacaggaaaagcctgcgcgcaaagcccgggcggataacgatccccgc
aataaaacacgcagacccaagcgtgatgctgtagaagcaaaatcagtggaagcgcccaaa
gagagccaagtagagaagcctgccgcacgcgcaaaagtaagtgcgccaaacgcagacagc
ccctctgtggaaaccaagagcaaggaagacaaaaaagaggagcgcgcagctaaagcgcct
gctgttgagcaaccaaagaaagaggcgcatacagaggccaaggacaagccagacacggca
acggataaaggcgcagaaaaagcagcttcagcaccagctgctgagaagaaagcttctgac
aagccagttgcagctgctgcgcaatccgaagaggagcctaagcgagccttcaacgatcct
cgcgaggtgcgcaagcgcatacaggctcagaaaactcaaaccagcagcaactcgactagt
gcttccgcccctcagccaatggcggcccccaaagctcccgaagcggcgaccatcgaatcc
aaggtggaagcgaaagagcctgagcagcctccaaaagcgccagttccagtggtggagaaa
actcgcgaggaggccgagcctcccaagagcgctcccagcgccccagaggcgactgtcgct
gacgtaaaggctgaagacaagccttcatctcaggacagtaaggcgtcacaagcctaa
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