Hahella sp. KA22: ENC22_18195
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Entry
ENC22_18195 CDS
T05793
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
hahe
Hahella sp. KA22
Pathway
hahe03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
hahe00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
ENC22_18195
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
hahe03400
]
ENC22_18195
Enzymes [BR:
hahe01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
ENC22_18195
DNA repair and recombination proteins [BR:
hahe03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
ENC22_18195
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
UvrB_inter
Helicase_C
CarD_TRCF_RID
MFD_D3
ResIII
UB2H
ERCC3_RAD25_C
AAA_30
SecA_DEAD
RecG_dom3_C
Glyco_tran_WecG
Motif
Other DBs
NCBI-ProteinID:
AZZ93034
UniProt:
A0AAE5XKU5
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All DBs
Position
4155161..4158610
Genome browser
AA seq
1149 aa
AA seq
DB search
MTERRQLPSNSTTIKYWPQAVGQSDAYILAQALKEQKRLLVVITPDMPSADQLESAVKFF
LGDAKKNENTPPILTLPDWETLPYDTFSPHQDIISQRIQTLHKLPTCASGLLIVPLSTIM
VRLAPKEFVQRSTLILRKGQPLRIDSYRSELEQAGYRCVDTVYEHGEFAVRGSIFDIFPM
GSKAPYRIDLFDEEVETLRQFDPETQRSAGQVDEISLLPAHEFPLNGTSIQLFKDNFYEK
FPGASRNIPLLQDISRGIATPGLEYYLTLFFTETASLLDYVAKDACFALYDGLHEKALHF
WKDLEQRYEDLRHDIQRPILPPADIYLRVEELFEGLKQFPRAQFSAKSEETDKPFSPLPH
LALDAKKENPLQAIDCAQQDSGYKVVLCAESPGRQQALMDTFKEHGRPLNLLESWEACLK
SAVPWNITVAELAKGFADNENRILVVAEADLYEGRVLQRRRRKRTQESPENIIQNLTELK
LNAPVVHIDHGIGRYKGLQSLEVDGQKQEFLVLEYANEAKLYVPVSSLHLISRYAGLDDN
LAPINKLGTDRWSAAKRQAAEKIKDSAAELLEIYAKRELHKGYACPPPDEHYRAFSATFP
FEETPDQATTINAVLQDMMKPRPMDRLVCGDVGFGKTEVAMRAAFLAAHAGRQVAILTPT
TLLAQQHFQSFQDRFADTAINVELISRFRSAGDIEKVKDKLSEGKVDILVGTHKLLQKDI
QFKNLGLLIIDEEHRFGVQQKEKVKSLRANIDILTLTATPIPRTLNLSFQGVRDLSIIAT
PPEKRLSVKTFVQEHSNSIIKEAVLREILRGGQVFFLHNEVNTINKAAAELQEMVPDARV
AVAHGQMRERELEKVMSDFYHKRFNVLMCTTIIETGIDIPSANTIIIERADKFGLAQLHQ
LRGRVGRSHHQAYAYLLTPPPRNLTEDAKKRLDAISSAQDLGAGFTLATHDLEIRGAGEL
LGEEQSGHIQNIGFTLYLQLLDAAVKAMREGKELDLTQPIDQGCEVNLRLPALIPDDYLP
DVHNRLILYKRIASAKDEDALQSLQIEMIDRFGLLPDATKNLFRQARLKLTADRLGIARI
DIGAKGGVIEFNAKTTIEPIKLVNLIQREPKHYKLDGGSKLRVTRSLEDKEDRMQFVEKL
LKSFAPARA
NT seq
3450 nt
NT seq
+upstream
nt +downstream
nt
ttgacagagcggcgccaacttccttcaaattcaacgactatcaagtactggcctcaggcc
gtcggacagtcagacgcttacattctggcgcaggcgctcaaagagcaaaaacgcctgttg
gtggtaataacaccagatatgccctcggcggatcagctcgaatcagcggtaaaatttttt
ttaggggatgcgaaaaaaaatgagaacacgcccccaattttgactttaccggactgggaa
accctcccttacgatactttttcgcctcaccaggacattatttcccagcgtattcagacc
ctgcataagctaccgacctgcgctagcggcctgcttattgtcccgctcagcaccatcatg
gtgcgcttggcgccgaaagagtttgtgcaacgctctaccctgatcctgcgcaaaggtcag
ccgctcagaatagacagttatagatccgagctggagcaagcgggctaccgctgtgtagat
acagtctatgagcacggggagttcgccgtcagaggatcgatcttcgacatattcccaatg
ggctccaaagcgccttatcgtattgacttgtttgacgaagaagtcgaaaccctgcgtcag
tttgacccagagacccagcgctctgcaggacaggtggatgagatcagtctgctgcccgcg
cacgagtttccacttaacggcacgtctatccaactgttcaaagacaacttctacgagaag
tttcccggcgcgtcacgcaacatccctttattgcaagacatcagccgcggcatcgccact
cccggactggagtattatctcaccctattcttcactgagaccgccagtctgcttgattat
gtcgccaaggacgcctgcttcgctctttatgatggactgcatgaaaaagcgctacatttt
tggaaagatcttgagcagcgttacgaggatttgcgccacgatattcaacgccccatctta
ccgccagcagatatttatctgcgggtcgaggagttgtttgaggggctgaaacaattccct
cgcgcgcaattcagcgccaagtccgaggaaacggacaagccgttctcccctcttccccac
ctggccctggacgccaaaaaggaaaatccgttacaggctattgactgcgcccagcaggac
agcggctacaaggttgtcttatgcgcggaatcccccggacgccagcaagcgctgatggat
acattcaaggagcacggcagaccgctcaatttgctggagtcctgggaggcgtgtctgaag
tccgccgtcccttggaatatcacggtggcggagctggcgaaaggtttcgctgacaacgaa
aaccggattctggttgtagcggaagctgacctgtatgaaggcagagtcctgcagcgaaga
cgccgcaagcggacgcaggaaagccctgaaaacatcattcagaatttgaccgagctaaag
cttaacgcgccggttgtgcatatcgatcacggcatcggccgctataaaggcttgcagtca
ctcgaagtcgacggccagaagcaggagtttctggttctggaatacgccaacgaagctaag
ctttatgtaccggtatcctccctgcatctgatttcccgctacgcaggtcttgacgacaat
ctggcgccgatcaataaactcggtacggatcgctggtccgccgctaagcgtcaagcagcg
gagaaaattaaagacagcgcagcggaattgctggagatttacgccaagcgcgagctgcac
aaaggctacgcctgcccgccgccggacgagcattaccgcgccttctccgccaccttcccg
tttgaggaaacgccggatcaggccacgacgatcaacgcagtcttacaggacatgatgaaa
ccacgccccatggaccggctggtctgcggcgatgtgggcttcggtaaaacggaagtcgcc
atgcgggcagccttcctcgccgcgcacgcaggacgtcaggtggcgatacttacgcctacc
acgctgcttgcacagcagcactttcagtcctttcaggaccgtttcgcggacactgcgatc
aatgtcgaactgatctcccgttttcgcagcgccggcgatatagaaaaagttaaagacaaa
ctatcggaaggcaaagtcgacattcttgtcggcacccataagctgctgcagaaagatatc
cagtttaagaatctcggcttgctgatcatcgacgaggagcatcgtttcggcgtgcagcaa
aaggagaaagttaaatctctgcgcgccaacatcgatatactcacgctgaccgccacgccg
ataccccgtaccctgaacctgtccttccagggcgtccgcgatttgtccattatcgccacc
ccgccagagaagcgcctatccgtcaaaaccttcgtacaggaacacagcaacagcattatc
aaagaagctgtgttgagggaaattttgcggggcggccaagtgttctttctgcacaacgaa
gtcaacaccatcaacaaggctgcggccgagttgcaggagatggttccggatgcgcgcgtg
gctgtcgcccatggccagatgcgtgagcgtgagctggaaaaggtcatgtcggatttttac
cataagcgcttcaatgtgctgatgtgcaccaccatcattgaaaccggtatcgacatcccc
tccgccaacaccattatcatcgagcgcgcggataaattcggcttggcgcagttgcaccag
ctgcggggccgggtcggacgctctcatcaccaggcatacgcgtatctgttgacgcctccg
ccacgcaacctcactgaggacgccaagaaaagactggacgccatcagcagcgcccaggat
ctcggcgccggattcactctggccactcacgacctggaaattcgcggcgcaggggaattg
cttggcgaagagcaaagcggacatatccagaacattggcttcacgctttatctgcaattg
ttggatgcagcggtcaaagccatgcgcgagggcaaagagctggacctgacccaacctatt
gatcaaggttgtgaagtcaatctgcgtttgcccgccctgattcccgacgactatctgccg
gatgtccataaccgtctgatcctgtataagcgcatcgccagcgccaaagatgaggacgcc
ttgcagtctctgcaaattgaaatgattgaccgcttcggcctgctgccagacgcgaccaaa
aacctgtttcgtcaggctcgtctgaaattgaccgctgacagactgggcatcgctcgaatt
gatatcggagccaagggcggcgtgatcgaattcaacgccaagaccaccatcgaaccgatc
aaactggtcaatctcatccagcgagaacccaagcactataaattggacggaggctccaag
ttacgcgtcactcgctcactggaggacaaggaagaccgtatgcaattcgtggaaaaactt
ctgaagtccttcgctcccgcccgcgcataa
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