Hahella sp. KA22: ENC22_21715
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Entry
ENC22_21715 CDS
T05793
Symbol
rlmD
Name
(GenBank) 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD
KO
K03215
23S rRNA (uracil1939-C5)-methyltransferase [EC:
2.1.1.190
]
Organism
hahe
Hahella sp. KA22
Brite
KEGG Orthology (KO) [BR:
hahe00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
hahe03009
]
ENC22_21715 (rlmD)
Enzymes [BR:
hahe01000
]
2. Transferases
2.1 Transferring one-carbon groups
2.1.1 Methyltransferases
2.1.1.190 23S rRNA (uracil1939-C5)-methyltransferase
ENC22_21715 (rlmD)
Ribosome biogenesis [BR:
hahe03009
]
Prokaryotic type
rRNA modification factors
23S rRNA modification factors
ENC22_21715 (rlmD)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
tRNA_U5-meth_tr
Methyltransf_31
Methyltransf_25
Methyltransf_15
TRM5-TYW2_MTfase
Methyltransf_11
TRAM
PCMT
MTS
Methyltr_RsmB-F
Methyltransf_23
Ubie_methyltran
RrnaAD
DREV
CMAS
PrmA
Motif
Other DBs
NCBI-ProteinID:
AZZ93672
UniProt:
A0AAE6CIX9
LinkDB
All DBs
Position
complement(4943878..4945218)
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AA seq
446 aa
AA seq
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MSRRRKKLPQESITCEIESLSHEGRGVSHKDGKTLFVEGALPGETVTARYVNSRRSYDEL
AVEEVLTQHPQRIEPDCQFSKLCGGCSMQHVDLGFQINHKESVLLDHLRHFGDLKPEQVV
PPLVGAGRGYRTKARLGVRYVAKRDEVLVGFRERYSNFLTAIDECPILIESVGGRIPELK
ALIRSLTGYQRIPQIEVAAGDDVCALVIRHMDPLTEEDLQKLIAFSEQTGLAIYLQPKGP
DTVAKLWPKDGQELLSYQLSDYDLTMQFHPMDFTQVNRDINRRMLAQALEWLQPQAGETI
LDLFCGLGNFTLPIARSAAHVVGVEGSEDMVRRGYANAELNSVSNVEFHAADLHLPLAPA
KEAKHAWLRTYDKVLLDPPRSGAEELAKQMTRFGAKRIVYVSCNPATLARDAGILAAQGY
KLIKAGVMDMFPHTAHVESMALFEKA
NT seq
1341 nt
NT seq
+upstream
nt +downstream
nt
atgtctcgtcgtagaaagaagttaccccaagagtccattacctgcgaaattgaatccctc
agtcacgaagggcgtggcgtctctcataaagacggcaaaactctgtttgtcgaaggcgca
ttgcccggcgaaacggtgactgcgcgatacgtaaacagtcgtcgcagttatgatgagctt
gctgtagaagaggtgctgacgcagcatccgcaacgcattgagcctgactgccaattctcc
aaactgtgcggcggctgcagcatgcagcatgtcgatctgggctttcagatcaatcacaaa
gagtctgtgttactggatcacctgcgacattttggcgacttaaagccagagcaggttgtt
ccgcctctggtgggcgcggggcgcggttatcgcacaaaagcgagactgggcgttcgttat
gtcgccaagcgggatgaagtcctggttggattccgcgagcgctacagcaatttcctgacc
gccattgatgaatgcccgatcttgatcgagtccgtcggcggccgtattcctgaactgaaa
gcgctgatcagaagccttaccggctatcagcgaattccgcagatcgaagtggcggcgggc
gatgatgtttgcgctttggtgattcgccacatggacccgctcactgaagaagatttgcaa
aaactgatcgctttctctgaacaaaccgggttggcaatctatttgcagccaaaaggtccc
gacacagtcgcgaaactatggccgaaagatggtcaggaactgctgagttatcaattgagc
gactatgatttgacgatgcagttccatccgatggactttactcaggtcaaccgcgatatc
aatcgccgcatgttggcgcaggccctggaatggttgcagccgcaggctggcgagaccatc
cttgatcttttttgcgggctgggtaacttcactctgcctatcgcccgttcggcggcgcat
gtggtgggggtagagggcagcgaggacatggtgcgtcgaggctacgccaatgcggaactt
aacagcgttagcaacgtagagtttcatgcggcggacctgcatcttccattggctccggcg
aaagaggcgaagcatgcatggctgcgcacttatgacaaagttctgctggacccgcctcgc
tctggcgcggaagagttagcgaagcaaatgacccgtttcggggcgaagcgaattgtttat
gtgtcctgtaaccccgctactttggcgcgggacgccggcattctggcggcgcagggatac
aagctgatcaaggccggggtaatggatatgttcccgcatacggcccatgtcgagtcaatg
gccttattcgagaaagcataa
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