Hahella sp. KA22: ENC22_22165
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Entry
ENC22_22165 CDS
T05793
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
hahe
Hahella sp. KA22
Pathway
hahe03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
hahe00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
ENC22_22165
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hahe03019
]
ENC22_22165
03016 Transfer RNA biogenesis [BR:
hahe03016
]
ENC22_22165
Enzymes [BR:
hahe01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
ENC22_22165
Messenger RNA biogenesis [BR:
hahe03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
ENC22_22165
Transfer RNA biogenesis [BR:
hahe03016
]
Prokaryotic type
tRNA degradation factors
ENC22_22165
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
OB_RNB
S1
RNase_II_C_S1
WHD_RNase_R
Motif
Other DBs
NCBI-ProteinID:
AZZ93751
LinkDB
All DBs
Position
complement(5037879..5040305)
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AA seq
808 aa
AA seq
DB search
MGKKKKSSLDPFAEREAARYEHPTASREFILAFLEERGAPATIEEIASSFNVVQPEPYEG
LRRRLIAMCRDGQLVCNRRGAYGLPKKMNLIRGRVQGHKDGYGFVIPEEGGSDLYLSSRQ
MKRVFDGDIVLVREEGREFKGKREGVIVEVVERRTFEAVGRIYMESGVAFVVPDNPRITQ
DILVPEHALNGAKHGQYVTLEIVRQPDVRVNPMGHVKEVLGEHMAPGMEIDVALRTYSIP
FRWPEEVDAEAAKFKSKLSARDKAHRVDIRHLPLVTIDGEDARDFDDAVYCEAKKSGGWR
LYVAIADVSHYVKPQTALDKEAFQRGNSVYFPNRVVPMLPEVLSNGLCSLNPDVERLCMV
CEMTISQKGKLSGYKFYEGLMLSKARLTYTKVGAYIDDPESAEGKAFAERYADLAPHIRE
LHKLYMALRLAREERGAIDFETVETRILFDSDRKIDKIVPVVRNDAHKLIEECMLCANVA
TAKLLEKYEIPSLFRVHEGPTAERLENLRAFLGELSLSLGGGSNPKPSDYQALTEIIRGR
PDSATLQTVMLRSLSQAVYQPENKGHFGLGYEAYTHFTSPIRRFPDLLVHRAIRDLIRSE
RPCKNVQRVEGAPALPKSARYNYDMQALLVLGEQCSMTERRADEATRDVMSWLKCEYLTQ
HVGEKFDGIVAAVTAFGLFVELKDLYVEGLVHVSSLKSDYYQFDAVKHRLVGERTGVTHR
LGDAVRVQVVRVGLEDRKIDLEMIGEPKRSASGKKNKRKEILAQWNEEWKKEKKAGGGQP
AKGAKGGKRSEASGPLRKPQKKGRRKRS
NT seq
2427 nt
NT seq
+upstream
nt +downstream
nt
atgggaaaaaagaaaaagagtagtttggatccctttgcggagcgcgaagccgcccgttat
gaacaccctaccgcgagtcgcgaatttattcttgcctttcttgaagagcgcggcgctccc
gcaactattgaagaaatagcttcctcttttaatgtggtgcagcctgagccctatgaaggt
ttgcgtcgtcgattgatcgccatgtgtcgggatgggcagctggtgtgcaatcgcagggga
gcctatggcctaccaaagaagatgaatctgattcgcggtcgggtgcagggacacaaagat
ggctacggctttgttattcctgaagagggcggctcggatttgtacctgtcgtcacgtcag
atgaagcgggtctttgatggcgatattgtgttggtgcgcgaagaaggccgcgaatttaaa
ggtaagcgtgaaggcgtgatcgttgaagtggtcgaacggcgaacattcgaagccgtagga
cgcatatatatggagagcggggtcgctttcgttgttccagacaatcctcgtattactcag
gacatcctggtgccggaacatgctctcaatggcgctaagcacggacaatatgtgacattg
gagattgtgcgtcagcccgatgtccgcgttaatcccatggggcatgttaaagaggtgctg
ggtgagcacatggcgccgggtatggaaatcgatgtcgctctgcgcacttactccattcca
ttccgctggcctgaagaggtcgatgcggaggccgccaagttcaagtccaaattgagtgcg
cgcgataaagcgcaccgtgtcgacattcgacatctgccattagtgacaattgatggcgag
gatgcgcgggattttgatgatgcggtctattgtgaggcgaagaagtctggcggctggcgt
ttgtatgtggcgattgctgatgtttctcactacgtgaaaccacagacggcgttggacaaa
gaagcctttcagcgcgggaactcagtttacttccctaatcgcgtggtccccatgttgccc
gaggtgctatccaatgggctgtgctcgctcaatcctgatgtcgagcgtttgtgtatggtc
tgtgaaatgaccattagccagaaggggaagctgagcggctataagttttatgaagggctg
atgctttccaaggcgcggctgacctacacgaaggtgggcgcctacattgatgaccctgag
tctgccgaggggaaagcctttgcggaaagatatgctgatctggcgccgcatattcgcgag
ctacataagttgtatatggcattgaggttggcccgggaagagcgcggcgccattgatttc
gaaaccgttgaaacccgtattcttttcgattcggaccgcaagatcgataagatcgtacct
gtagtgcgcaatgacgcccacaaactcatagaagaatgcatgctgtgcgccaatgtggcg
acggcgaaactgttagaaaaatacgaaataccttctctatttcgcgtgcacgaagggcct
acggcggagcgactggagaatttgcgcgcgtttcttggtgagttaagtttaagtcttggg
ggcggctccaatccgaagccgtcagactatcaggcgttgacggagattatccgtggccgg
cctgatagcgccacactgcagactgtcatgttgcgttcgttgagtcaggcggtatatcag
ccggagaacaagggtcactttggtttggggtatgaggcgtatacgcattttacttcgccg
attcgtcgctttccggacttgctggtgcacagagcgatcagggatctgattcgaagtgaa
cggccctgcaagaatgtgcagcgggtagagggcgcgccagccttacctaaaagcgcgcgt
tataactatgacatgcaggcgctacttgttcttggagagcaatgctcgatgactgagcgc
cgcgcggatgaggccactcgcgacgtgatgagctggctcaagtgcgagtacctgactcaa
catgtgggcgagaagtttgatggtattgtggcggctgtcaccgcgttcggacttttcgtc
gagcttaaagatttatatgtggaagggcttgtccatgtttcctcgctgaagagcgactat
tatcaattcgacgcggtgaagcatcgtcttgtcggagagcgcacgggcgttacgcatcgc
ctgggcgatgcggtgagggtgcaagtggtccgagtcggactcgaagatcgtaagatcgat
ttggaaatgattggcgagcccaaacgctcggcgtcgggtaaaaagaacaagcgcaaggaa
attctggcgcaatggaatgaagagtggaaaaaggaaaagaaagcgggtggcggacagcct
gcaaaaggcgccaaaggaggcaagcgttccgaggcgagtggtcctttgcgcaaaccgcaa
aaaaaaggacgccgcaaacgctcttag
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