Hahella sp. KA22: ENC22_27145
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Entry
ENC22_27145 CDS
T05793
Symbol
rpoD
Name
(GenBank) RNA polymerase sigma factor RpoD
KO
K03086
RNA polymerase primary sigma factor
Organism
hahe
Hahella sp. KA22
Pathway
hahe02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
hahe00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
ENC22_27145 (rpoD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
hahe03021
]
ENC22_27145 (rpoD)
Transcription machinery [BR:
hahe03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
ENC22_27145 (rpoD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_ner
Sigma70_r3
Sigma70_r1_1
Sigma70_r2
Sigma70_r4
Sigma70_r1_2
SQS_PSY
Motif
Other DBs
NCBI-ProteinID:
AZZ94666
UniProt:
A0AAE6CKK6
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All DBs
Position
6130908..6132830
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AA seq
640 aa
AA seq
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MSGNSRKSRLKELIARGKEQGYLTYAEVNDHLPEDIADPDQVEDIIRMINDMGIMVCEEA
PDADTLLITDGDSTDESVAAEAAAALASVENDVGRTTDPVRMYMREMGTVELLTREGEIQ
IAKRIEEGLRDVMATLVYYPGTVSNILAAFDATQGEDGGRVSDVITGFLDPVEDGVIPEA
NDEIESDDVDEDEDEDEEAEESSGKKDDAKAKKDLDEDEDEESEGDDSSDSDDDNDSGPD
PEIARGRFAELREAFNTLNAAIDKHGRASREAQECFEEVSRIFAPFKLAQKQFDEIINTI
RITNDSVRKYEREILNICTRDCKMPRKNFIKMFPGNETNLEWVKGLAARSEEWAKTAQTK
EEEITRLQRRIVSIQNDVDLPVADIKEIHRRISIGEAKARRAKKEMVEANLRLVISIAKK
YTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIP
VHMIETINKLNRISRHMLQEMGREATPEELAKKMDMPEDKVRKVLKIAKEPISMETPIGD
DEDSHLGDFIEDSHAESPIDSATTEGLKESTRRVLAGLTAREAKVLRMRFGIEMNTDHTL
EEVGKQFDVTRERIRQIEAKALRKLRHPSRSDHLRSFIDD
NT seq
1923 nt
NT seq
+upstream
nt +downstream
nt
atgtcaggcaattcccgaaaatctcgattgaaagaactcatcgcccgcggcaaagaacaa
ggttacctaacatacgcagaagttaatgaccatctgccagaggatatagcagatccggat
caggtggaagacattatacgcatgattaacgacatgggtatcatggtctgcgaagaagct
ccagatgcggataccttgttgatcaccgatggtgattccactgatgagtctgtagcagcg
gaagctgcggcggcgcttgcctctgtcgaaaacgatgtaggtcgcactactgacccggtg
cgtatgtacatgcgtgagatgggtacggttgagctgctgactcgtgagggtgagatccag
atcgccaagcgcatcgaagaaggtttgcgcgatgttatggccacgctggtttactatcct
ggcacggtttccaacattcttgccgcttttgacgccacacaaggcgaagatggcggtcgc
gtctccgacgtcatcaccgggttccttgaccctgttgaagatggcgtcattcctgaagct
aacgatgaaatagagtccgatgacgtcgacgaagacgaggatgaggacgaagaagcagaa
gaaagctcaggcaagaaggacgacgctaaagccaaaaaagacctcgacgaggacgaggac
gaagaaagcgagggcgacgacagcagcgatagcgacgacgacaatgacagtggccccgac
cctgaaattgcgcgcggccgttttgctgaattgcgcgaagcctttaacacgctgaacgcc
gccattgacaagcatggccgcgccagccgtgaagcacaggaatgctttgaagaggtcagt
cgtatttttgctcccttcaaactggcgcaaaagcagttcgacgaaattatcaatacgatc
cgcattactaacgacagtgtccgtaagtacgaacgcgagatcctgaatatctgtacccgc
gactgcaaaatgccgcgtaagaacttcatcaagatgttccccggcaatgagaccaacctt
gagtgggtcaagggtctggctgcaagaagcgaggaatgggctaaaacagcgcaaaccaag
gaagaggaaatcactcgcctgcagcgtcgcatcgtcagcattcagaatgatgttgatctg
cctgttgcagacatcaaggaaatccaccgtcgtatctccattggcgaagcaaaagcacgt
cgcgccaagaaagaaatggtggaagccaacttgcgtctggttatctccatcgccaaaaag
tacaccaaccgtggtctgcagttcctggacctgattcaggaaggcaacattggcttgatg
aaagcggtagacaagtttgaataccgccgcggatacaagttctccacttatgcgacctgg
tggattcgtcaggcgatcacgcgctctatcgctgatcaggcccgtactatccgtattcct
gtgcacatgattgagaccatcaataagctgaaccgcatttcccgtcacatgctgcaggaa
atgggccgcgaagcgacgccggaagaactggcgaagaagatggatatgccggaagacaaa
gtgcgcaaggtcctgaaaatcgccaaagagcccatctccatggagacgccgatcggtgac
gacgaagattcgcatttgggcgatttcatcgaagattctcacgcagagtctccgattgat
tcagcgaccactgaaggcctgaaagaatctactcgccgcgtactggctggtttgaccgca
agagaagccaaagtactgcgtatgcgtttcggtattgagatgaatacggaccacactctg
gaagaagtcggcaagcagttcgacgtcacccgtgagcgtatccgtcagatcgaagccaaa
gccctgcgcaaactgagacaccccagccgctctgaccatctgcgtagcttcatcgacgat
taa
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