Hahella sp. KA22: ENC22_29775
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Entry
ENC22_29775 CDS
T05793
Name
(GenBank) VacB/RNase II family 3'-5' exoribonuclease
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
hahe
Hahella sp. KA22
Pathway
hahe03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
hahe00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
ENC22_29775
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hahe03019
]
ENC22_29775
03016 Transfer RNA biogenesis [BR:
hahe03016
]
ENC22_29775
Enzymes [BR:
hahe01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
ENC22_29775
Messenger RNA biogenesis [BR:
hahe03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
ENC22_29775
Transfer RNA biogenesis [BR:
hahe03016
]
Prokaryotic type
tRNA degradation factors
ENC22_29775
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
OB_RNB
S1
Motif
Other DBs
NCBI-ProteinID:
AZZ95167
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All DBs
Position
6683732..6685705
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AA seq
657 aa
AA seq
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MLNSDALTQLKQFKQDLRIANNRFEGTVKGSPGRFGFAVLDDGRECFLNPDEMQKVFPGD
RILVEVSQDDKGRDVAKVVQHMRSELKYFVGRYFTRGQGHFVEPDLMGMNRWIFIPPKKR
QQAHVNDLVLCRVLQHPFPEGKPQAEVVKIIGKPGASGLEVNYMLAKYNLQAHNRASINE
AELQKQVAAELEKRKDLRETPFVTIDAASTQDMDDALFATAKPEGGWELLAAIADPSSLI
PEGGDIDKYAQRLGSSFYFADRTLPMLPAKLANHFCSLKSGEDRLALVCTMQIDADGAIS
SYTIEEAAIRCAANLAYEDVAAALTSGDASAHAQGATLQALNDVRTALASHRREHALVNE
DRPDYQLELDENGKVKNIYRKINSVAHSIVEEAMVASNRCAADFLKQNTERSLYTSHSGF
RPERLDQIKQIVSEQISDYDCSNLHTWEGFKKFMDFLDANPPEVPVKAIANRLLARGALS
DQPCPHFGMGLPHYTTFTSPIRKYVDLSIHRQIKGVLKSQKPHTLNDKAIQQLQESLRAG
RSAVNESETWLKCEYAQTLIGKTFDGVVQHTTGSGFQARLDENGIEGMVNLGALQEKFRF
DGTYFQHTGEHRQFRLEQPVKVTITAVDMEKKLIQMELAEPAPVAQPVTAEEPQAEQ
NT seq
1974 nt
NT seq
+upstream
nt +downstream
nt
atgttaaattccgatgccttaacccaattgaaacagttcaaacaagacctgcgtatcgcc
aataaccgttttgaaggaacggtgaaaggcagtccggggcgttttgggtttgctgtgttg
gatgacggcagagagtgcttcctgaacccggacgaaatgcagaaagtatttccgggcgac
cgaattctggtggaagtcagccaggacgacaaaggccgcgacgtcgccaaagtcgtgcaa
cacatgagaagtgagctgaagtatttcgtcggccgttatttcacccgtggccaagggcac
ttcgtagagcccgacctgatgggcatgaaccgttggattttcatccctccgaagaagcgc
cagcaagcgcacgtcaacgatctggttctgtgtcgcgtcttgcagcatcccttccctgaa
ggtaagccacaggccgaggtggtgaaaatcatcggcaagcccggcgcatccggcctggaa
gttaattacatgctggccaagtacaatctgcaggcccacaaccgcgcctccatcaatgaa
gcggaactgcagaagcaagtcgccgctgagctggaaaagcgtaaagatctgcgggaaacg
ccgttcgtcacgatcgacgccgccagcactcaggatatggacgacgccctgttcgccacc
gccaagcctgaaggaggctgggagttgctggctgccatcgccgacccgtcttcactgatc
ccggaaggcggcgacatcgacaaatatgcgcaacgtctgggcagttctttctacttcgcc
gatcgcacattgcccatgttgccggccaaactggccaatcacttctgttcactaaagtcc
ggcgaagaccgtctggctctggtttgcactatgcagatcgacgctgatggcgctatttcc
tcttacaccattgaagaagccgccattcgttgcgccgccaatctggcttatgaagacgtc
gccgccgcgttaacctccggcgacgccagcgcccatgcccagggcgcgaccttgcaggct
ctgaatgacgtcagaacggccctggccagccatcgccgcgagcatgcgctggtgaatgaa
gaccgcccggactatcagttggagctggatgagaacggcaaggtcaaaaacatctatcgc
aagatcaacagcgtggctcactccatcgtagaagaagcgatggtcgcctccaatcgctgt
gcggcggatttcctgaagcagaataccgagcgttctctgtacacttctcacagtggattc
cgtcctgagcgtctggatcagatcaaacaaatcgtctccgagcagatctccgactacgat
tgcagcaacctgcatacgtgggaaggcttcaagaaattcatggacttcctggacgccaat
ccgccggaagtacccgtgaaagctatcgctaaccgcctgctggcgcgtggcgcgctgtct
gaccagccctgccctcatttcggcatgggactgcctcactacacaactttcacgtccccg
attcgcaagtatgtggacctgagcattcatcgccagatcaaaggcgtactgaagagtcag
aagccgcacacattgaacgacaaagccatccagcaattgcaggagtctctgcgcgccggc
cgtagcgccgtgaacgagtctgagacctggctgaaatgcgaatacgctcagacgctgatc
ggcaagacctttgatggcgtggtgcagcacacgactggctctggattccaggcgcgtctg
gatgagaatggcattgaaggcatggtgaatctgggcgccttacaagagaagttccgcttc
gacggcacttacttccagcacactggcgagcatcgccaattccgtctggagcagccggtg
aaggtcaccatcactgcggtcgacatggagaaaaaactgattcagatggaactggcggag
cctgccccggtagcgcagcccgttacggcggaagaaccgcaagccgagcaataa
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