Hahella sp. HNIBRBA332: O5O45_02535
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Entry
O5O45_02535 CDS
T09430
Name
(GenBank) RtcB family protein
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
hahh
Hahella sp. HNIBRBA332
Brite
KEGG Orthology (KO) [BR:
hahh00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
hahh03016
]
O5O45_02535
Enzymes [BR:
hahh01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
O5O45_02535
Transfer RNA biogenesis [BR:
hahh03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
O5O45_02535
Prokaryotic type
tRNA splicing ligases
O5O45_02535
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
Motif
Other DBs
NCBI-ProteinID:
WLQ14813
LinkDB
All DBs
Position
511834..513042
Genome browser
AA seq
402 aa
AA seq
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MPVFIELNKSGDAGSAPVKIFTAEVEYQAMSQLKNLARLPIIHSHIAAMPDVHVGIGATV
GSVIPTRSAIIPSAVGVDIGCGMNAVRLSLKASQLPDDLSRIRSAIERAVPVGQRAHSSV
SSRFAACKTLAPGADRLLEQHPKLSKMLPRAQQTWVRQLGTLGSGNHFIEVCVDQSQDVW
VMLHSGSRGIGNVIGRYFIERARKDMSRHIANLPDRDLAYFEEGSPHFAAYLDAVEWAQE
YARVNREEMLGLTLRAMQPFLPSFTTTCEAINCHHNYVQKERHYGADVYVTRKGAISARE
GQLGIIPGSMGARSFIVKGKGNPESFCSCAHGAGRKMSRMQARQRFTRDDLERQTAGVEC
RKDKGVLDEIPSAYKDIDEVMKNQSDLVEVVHELKQLICIKG
NT seq
1209 nt
NT seq
+upstream
nt +downstream
nt
atgcctgtttttattgagttaaataaatctggggacgcaggttccgcaccggtgaaaatt
ttcactgctgaggtggaatatcaagctatgtcccaattgaagaacttggcgcgtttgcca
atcattcattcccatattgcggcgatgccggatgtgcatgtcggcattggcgcgacagtt
ggctcggtgattcctactcgtagcgcgattattccgtccgctgtaggagtggatattgga
tgtggtatgaacgccgtcaggttgtcgctgaaagcgtcgcagctgcctgacgatttaagc
cggatacgttcagcgattgaacgcgcagtccctgttgggcagcgtgcgcactcctcagtc
tcatccaggtttgctgcatgcaaaaccctggcgccaggggcggacaggctgctggagcag
cacccgaaactgagtaaaatgctgccgcgggcgcaacagacctgggtgcgacaacttgga
accttgggaagcggcaatcactttatagaagtgtgcgttgatcaaagccaggatgtttgg
gtgatgttgcactccggtagtcgtggaatcggtaacgtgattgggcgctattttatcgag
cgcgcccgtaaagatatgtctcggcatatcgccaatttgccagaccgtgatttggcctac
tttgaagaaggcagtccgcactttgcggcttatctggacgctgtggaatgggcgcaggag
tacgcaagagtaaatcgggaggaaatgcttggcttgacgttaagagccatgcaaccgttt
ttgccgtcatttacgactacctgtgaggcgattaattgccaccacaattacgtgcaaaaa
gagcgacattatggcgcggacgtttatgtcacccgcaaaggcgcgatcagtgcgagggag
gggcagcttggcatcattccaggaagtatgggcgccagatccttcattgtgaaaggcaag
ggaaatccggagtctttttgctcttgcgcccatggcgcaggccgcaaaatgagtcgcatg
caagcgcgtcaacgctttactcgcgatgatcttgaaaggcagaccgcgggcgtcgaatgt
agaaaggataagggcgttctggacgaaataccctctgcatataaggacattgatgaagtc
atgaagaatcaatcggatctggttgaagtagttcatgaacttaaacagcttatctgtatc
aaaggataa
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