Hahella sp. HNIBRBA332: O5O45_04175
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Entry
O5O45_04175 CDS
T09430
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
hahh
Hahella sp. HNIBRBA332
Pathway
hahh03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
hahh00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
O5O45_04175
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hahh03019
]
O5O45_04175
Enzymes [BR:
hahh01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
O5O45_04175
Messenger RNA biogenesis [BR:
hahh03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
O5O45_04175
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_22
AAA_19
UvrD-helicase
ERCC3_RAD25_C
CMS1
Motif
Other DBs
NCBI-ProteinID:
WLQ15126
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All DBs
Position
complement(879273..880634)
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AA seq
453 aa
AA seq
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MSFASLGLSAPILDAISEQGYTSPSPIQLQAIPVVLEGKDVMAAAQTGTGKTAAFTLPIL
ERLSKGDRARSNQARALILTPTRELAAQVGECVSSYSSKLPLRSTVVFGGVKINPQMMRL
RRGVDVLVATPGRLLDLYNQNAVRFQDLEVLVLDEADRMLDMGFIHDIRKILDVLPKRRQ
NLMFSATFSNDIRKLAKELVNNPVEISVSPPNTTAKTVKQWIHPVDKKQKSSLLAQLIRD
NNWDQALVFSRTKHGANRLTRQLCAKGINSAAIHGDKSQNARTKALADFKAGSVQILVAT
DIAARGIDIDQLPQVVNFDLPQVAEDYVHRIGRTGRAGAEGQAVSLVSADEFKLLADIER
LIQKRLPREEIEGFEPEQRLPESRLPTQPLKARKPKKPKAAKNGEQRGQDRKTEKKGPRQ
EGATRNNANAPRRQRRRGSTAGKPAPRKEARSN
NT seq
1362 nt
NT seq
+upstream
nt +downstream
nt
atgagctttgcctccctcggcttgtccgcccccattctcgacgctatttctgaacagggc
tatacatcgccctcacctatccagttgcaagcaattcctgtcgttctggaaggaaaagac
gtcatggcggccgcacagacgggaaccggcaaaaccgccgccttcacgttgcctattttg
gagcgtttgtcgaaaggcgaccgggcgcgctcaaatcaggcacgcgccttgatcctcacg
ccaacgcgggaactcgccgctcaagtcggcgaatgtgtgtcttcctatagcagcaaactg
cctttacgctccaccgtggtttttggcggggtaaaaatcaatccgcaaatgatgcgctta
cgtcgcggtgtagacgtactggtggcgacgcctggacgcctgctcgacctgtacaatcaa
aacgctgtgcgctttcaggatctggaagtgctggtattggatgaagccgatcgcatgctg
gatatggggttcattcacgatattcgcaagattctggatgttttgccaaagcgtcggcaa
aacctgatgttctccgccaccttctccaacgatattcgtaaattggcgaaggagctggtt
aacaatccagtggagatttccgttagtccgcccaacacaacagccaaaacggtcaagcag
tggattcacccggttgataaaaagcaaaagtcctctttattggcgcagctcattcgcgac
aataactgggatcaagctctggtgtttagccgcaccaaacacggagccaaccgcctgacg
cgacaactctgcgccaaaggcatcaattccgccgccatccacggcgacaaaagccagaac
gccagaaccaaagcgctggcggatttcaaagccggaagcgtacagattttagtggcgacg
gacattgctgcgcgtggcatcgacattgaccaattgccacaagtcgtgaactttgatctg
ccccaagtggcggaagattatgtacaccgtatcgggcgcactggccgcgcgggcgcggaa
gggcaagcagtatcattggtcagtgcggatgagttcaagttactcgccgatatcgaaaga
ctgattcaaaaacgtctgccgcgtgaagaaatcgaaggatttgagcctgaacagcgactg
ccggagtcgcgcttgccgacgcaacccttgaaggcgcgcaagccgaagaaacctaaagca
gccaagaatggggagcagcgcggtcaagatagaaagaccgagaaaaaaggccctcggcaa
gagggcgcgacgagaaacaatgcgaacgcgcctcgcagacaacgcagaaggggctccacc
gctgggaaacctgcgccacgcaaagaggccagaagtaactaa
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