Hahella sp. HNIBRBA332: O5O45_04955
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Entry
O5O45_04955 CDS
T09430
Symbol
rne
Name
(GenBank) ribonuclease E
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
hahh
Hahella sp. HNIBRBA332
Pathway
hahh03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
hahh00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
O5O45_04955 (rne)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hahh03019
]
O5O45_04955 (rne)
03009 Ribosome biogenesis [BR:
hahh03009
]
O5O45_04955 (rne)
Enzymes [BR:
hahh01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
O5O45_04955 (rne)
Messenger RNA biogenesis [BR:
hahh03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
O5O45_04955 (rne)
Ribosome biogenesis [BR:
hahh03009
]
Prokaryotic type
rRNA processing factors
O5O45_04955 (rne)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
Motif
Other DBs
NCBI-ProteinID:
WLQ15272
LinkDB
All DBs
Position
complement(1058266..1061436)
Genome browser
AA seq
1056 aa
AA seq
DB search
MKRMLINATQPEELRVALVDGQKLYDLDIESGTREQKKSNIYKGKITRIEPSLEAAFVDF
GAERHGFLPLKEISREYFKSQPQKGGKMNIKDLLQEGQEIIIQVDKEERGNKGAALTTFI
SLAGRYLVLMPNNPRAGGISRRIEGDDRDQLKDAMSGLTVPKDMGLIIRTAGVGRSSKEL
QRDLDYLLQFWDSIRHASDSKPAPFLIYQESNVVIRATRDYLRQDIGEVLIDHPQVHQDA
LNFVKAVMPNFENRIKLYQDDIPLFNRYQIESQIETAFQREVKLPSGGSIVIDPTEALVS
IDINSARATKGGDIEETALQTNLEAADEIARQLRLRDIGGLIVIDFIDMTPNKNQREVEN
RLKEALELDRARVQIGKISRFGLLEMSRQRLRPSLGETRNEMCPRCKGQGSIRGVESLAL
SVMRLIEEEAFKERTAEVRAICPISVATYLLNEKRENLAKTQKRHGVKVIVVPNSHMDTP
HFEVQRIRDDNANVSEISYNVKPEMEEKNPVESLLHKEVVRQEAAVKTIVPSSTPTAPSE
EVGLLKRLRQKVSKMFSGEKKDSDLKITVTESPQTSQDKDAGRRKVKVRDRQDGQRDNQR
QDSRQAESRDGGQDNRRGNRGRNDDRNQRRNERNERNDGQKDRRQRDRDSNKGDSQRDQK
GRNESPKAESSSQEKSEFSRPRRDRSSGKPVPRPQRQDRPERQDKPETQEKVTEETVERI
TPTAAASVAEEPVKAEIAKEVWNKSVEAIAGAESSDSVQPSQTQAEEKSAAPAQQSEKQP
HESADQSKAPQDRASAQSAKHSDADSRQRKHDGVEAKQDASEGEKEKPERRSRAENDPRN
KARRPKREATETKSEETPKSSLEKPVSQAKASAPEVDSPSAESKNKEDKKEERMAKAPAV
ERPKKEATTEPKEKPDTAPATDKSATKTAPEPTAEKKLSDKPTEAAAEEEPKRAFNDPRE
VRKRIQAQKTPAGNGATGAMATRQMAAPKAPEAATIESKTEMKEPEQPKKAPAPAAEKPR
EEAESPKSAPSAPEATVSDVKAEDKPSSQDSKASQA
NT seq
3171 nt
NT seq
+upstream
nt +downstream
nt
atgaagcgaatgttgatcaacgcaactcaaccagaggagttgcgtgtagccctcgttgac
ggacaaaaactgtacgacctggacattgagtccggcacccgcgagcaaaaaaaatccaat
atctataaaggcaaaattacccgcatagagcccagccttgaggccgcctttgtagacttc
ggcgcagagcgccacggcttcctgcccctaaaagaaatttcccgcgaatatttcaagagt
cagccgcaaaaaggcggcaagatgaacatcaaggatttgctgcaggaaggtcaggaaatc
attatccaggtggataaagaagagcgcggcaataaaggcgcagctctcacgacattcatc
agtctggctggccgctacttggtgctaatgccaaacaacccccgcgcgggcggcatttct
cgtcgtattgaaggcgatgatcgcgaccaattgaaagacgccatgtcaggcctgacagtc
cccaaagacatgggactgattatccgcactgcgggcgttggccgctcctccaaagagctg
caaagagacttggactacctgctgcaattctgggactccatccgtcacgcatcagatagc
aaaccagcccccttcctgatctatcaggagagtaacgtagtcatccgcgccacccgcgac
tacttgcgccaggatattggcgaagttctgatcgaccaccctcaggtgcatcaggacgcg
ctcaactttgtaaaagcggtgatgccaaacttcgaaaaccgtatcaagctgtaccaagat
gatatccctctgttcaatcgctaccagattgaaagccagatcgaaaccgcgttccagaga
gaggtaaaactcccgtccggcggctctattgttatagatcctaccgaagccctggtttct
atcgacatcaactctgctcgcgccaccaaagggggcgacattgaagagaccgcactgcaa
accaacctggaagcagcagacgaaatcgcacgccaactgcgtctgcgcgatattggcggt
ctgatcgttatcgactttatcgacatgacgcccaacaagaaccagcgtgaggtggagaat
cgcctgaaagaggcgctggaattggaccgcgcccgcgtgcaaatcggcaaaatttcccgc
ttcggcttattggaaatgtcacgccaacgcctgcgtccatcattaggcgaaacccgtaac
gaaatgtgcccccgctgtaaaggccagggctctattcgcggagtagagtctcttgctctt
tccgtcatgcgactgatcgaagaggaagcgtttaaagagcgtacagcggaagtccgcgca
atctgcccaatcagcgtcgccacatacctgctgaacgaaaaacgtgagaatttagccaaa
acgcaaaagcgtcatggcgtgaaagtgattgtagtcccgaactcgcatatggacacccct
cacttcgaagttcagcgcatccgggacgacaacgccaatgttagcgagatcagctacaac
gtgaagcctgagatggaagagaaaaatccggttgaaagcctgctgcacaaagaagttgtg
cgccaggaagccgcagtaaaaaccatcgtgcccagctccacgcctaccgctccaagcgag
gaagtcggcctgctgaaacgcctgcgccagaaagtgtcaaagatgttctctggtgaaaag
aaagacagcgatctcaagattactgttacagagtctccgcaaacgtcacaagacaaagac
gccggccgcagaaaagttaaagtacgggaccgtcaggacgggcaacgcgacaatcaacgt
caggattcccgccaagccgaatcccgggatggcggacaggataaccgtcgcggcaaccgt
ggtcgcaatgatgatcgtaaccagcgccgcaacgaacgcaatgagcgcaacgacggacag
aaagatagacgccaacgcgaccgcgactccaacaaaggcgactctcagcgcgaccaaaaa
ggccgcaacgaatcaccgaaagcggagtcaagcagccaggaaaaatcggagtttagccgc
ccgaggcgcgatcgctcctccggcaaacccgtccctcgcccacagcgccaggacagacct
gagcgccaagacaaacctgaaacccaggagaaagtgaccgaggagactgtagagcgcatc
actcccactgcagccgccagcgtcgcagaagaacctgtgaaggctgaaatcgctaaagag
gtgtggaacaagtctgtagaagctattgctggagcagagagctccgacagcgtccaaccg
tcgcagacccaagcggaagagaaaagcgcagcgcctgctcagcaatcagaaaagcagccc
catgaatccgctgaccagagtaaggcgccgcaagatcgcgcgtcagcgcagtcagcaaaa
cactccgatgcggattcacgccaacgcaaacacgatggcgttgaagccaagcaggacgca
agcgaaggcgagaaggaaaagcctgagcgcagatcccgggcggagaatgatcctcgcaac
aaagcgcggcgccctaagcgagaggctacggagaccaaatcagaagagacgcccaaaagc
tcgctagaaaaacccgtctcacaagcgaaagcaagcgcgcctgaggtggacagcccttct
gcggaaagtaaaaacaaggaagacaagaaagaggagcgtatggctaaggcgcccgctgtc
gagcgaccaaagaaagaggcgaccacagagcccaaagagaagccagacacagcgcctgcg
acggacaaaagcgcaaccaaaaccgcgccagagccaacagcagagaagaaactttccgac
aaacctactgaggcagctgcggaagaagagcctaagcgggccttcaacgaccctcgtgag
gtacgcaaacgcatacaggctcagaagactcccgccggcaatggcgcgactggagcaatg
gcaacccggcaaatggcggctcccaaagcccccgaagcggcaaccatcgagtccaagacg
gaaatgaaagagcctgagcagcctaaaaaggcgccagctccagcggccgagaaacctcgc
gaggaagcagagtctcccaagagcgctcccagcgctccggaagcgaccgtctccgatgta
aaggctgaagacaaaccttcatcacaggacagcaaggcgtcacaagcctaa
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