Hahella sp. HNIBRBA332: O5O45_05265
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Entry
O5O45_05265 CDS
T09430
Name
(GenBank) DEAD/DEAH box helicase
KO
K03732
ATP-dependent RNA helicase RhlB [EC:
5.6.2.7
]
Organism
hahh
Hahella sp. HNIBRBA332
Pathway
hahh03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
hahh00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
O5O45_05265
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hahh03019
]
O5O45_05265
Enzymes [BR:
hahh01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
O5O45_05265
Messenger RNA biogenesis [BR:
hahh03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
O5O45_05265
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Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
P-loop_SecA
Utp25_C
ERCC3_RAD25_C
Motif
Other DBs
NCBI-ProteinID:
WLQ15327
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All DBs
Position
1124887..1126068
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AA seq
393 aa
AA seq
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MTVSDQTTDNAVLFSSLNLHPKLEQAIRDLKFERCTPIQGQTLPHTLQGVDLIGQAQTGT
GKTAAFLITILQRLVSNPIPTEERFSSEPRALVVAPTRELALQIEKDACELAKHLKLNII
SVIGGTQLDRQRRKLRDEAVDLLIATPGRLLDHLTSADIYLDQVEVLVLDEADRMLDMGF
IPDVKRIVRATPRERQTLLFSATFSEDIKNLARRWTEDPVEVMLAVDHLPAKTVDQRVYM
VESSAKRKLLVNLLKDSETRRVIVFCNRRDETRSLSEALNRHSIKNELISGELPQQKRLK
TLERFRKGDFRVLVATDVAGRGLHIDGVTHVVNYNLPDDPEDYVHRIGRTGRAGATGVSI
SFACEDDSFLIPELEKYLGHELALIHPDDDLLQ
NT seq
1182 nt
NT seq
+upstream
nt +downstream
nt
atgacagttagtgatcaaacgacggataacgccgtcctcttttcttctctgaatttacat
ccaaaacttgagcaggctattcgcgatctgaagtttgagcgctgcactccgattcagggg
cagacgctgccgcacacgttgcagggcgtggatctgatcggccaggcgcagacaggcacc
ggcaaaaccgccgcgttcctgatcaccattctgcagcgtctggtttccaacccaattcca
accgaagagcgcttctccagcgagccaagagccctggtggtggcgccgacccgggagctg
gcgttacagattgagaaagacgcctgtgagctcgccaagcacctgaagctgaatatcatc
tccgtcatcggcggcacgcagctggatcgccagcgcagaaagctgcgcgacgaagcggtg
gacttgttgatcgccacgccgggacgtttgctggaccatctcaccagcgctgatatttac
ctggatcaggtggaagtgctggtgctggacgaggcggatcgcatgttggacatgggcttt
attcctgatgtcaagcgtattgtccgagctacgccgagagagcggcagaccttgctgttc
agcgcgaccttcagtgaagacatcaagaatctggcgcggcgctggaccgaagatccggtg
gaggtcatgctggcggtggaccatcttcccgctaaaacagtggatcagcgcgtctacatg
gtggaaagcagcgccaagcgtaagctgttggtgaatctgttgaaagacagtgaaacccgg
cgcgtgatcgtattttgtaatcgccgtgacgaaacacgaagtttgtcggaagccttgaat
cgccactccatcaaaaatgagcttatatccggtgagttgccccagcaaaaacgcttgaag
acactggagcgtttccgtaaaggcgacttccgcgtgttggtcgccaccgatgtcgccggc
cgtgggctgcatatcgatggagtgactcacgtggtcaactataatcttcccgacgacccg
gaagattatgttcaccgtatcgggcgcaccgggcgtgcgggcgcgacgggcgtctccatc
agctttgcctgtgaggacgattccttcctgattccggaactggagaaatacctgggtcat
gagctggctctgattcacccggatgatgacttattgcagtag
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