KEGG   Hahella sp. HNIBRBA332: O5O45_14030
Entry
O5O45_14030       CDS       T09430                                 
Name
(GenBank) crosslink repair DNA glycosylase YcaQ family protein
  KO
K03724  ATP-dependent helicase Lhr and Lhr-like helicase [EC:5.6.2.6 5.6.2.4]
Organism
hahh  Hahella sp. HNIBRBA332
Brite
KEGG Orthology (KO) [BR:hahh00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:hahh03400]
    O5O45_14030
Enzymes [BR:hahh01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.4  DNA 3'-5' helicase
     O5O45_14030
    5.6.2.6  RNA 3'-5' helicase
     O5O45_14030
DNA repair and recombination proteins [BR:hahh03400]
 Prokaryotic type
  Other factors with a suspected DNA repair function
   DNA helicases
    O5O45_14030
SSDB
Motif
Pfam: DEAD_assoc WH_Lhr DEAD WH4_Lhr Helicase_C ResIII WH3_Lhr AlkZ-like Cas3-like_C_2 MarR_2 AAA_25 HTH_Crp_2 PqqD AAA_22 E2_bind
Other DBs
NCBI-ProteinID: WLQ17034
LinkDB
Position
3173333..3177751
AA seq 1472 aa
MSQALALFHPLIAEWFAANLGAPTDIQSKAWPRIASGEHCLITAPTGSGKTLTAFLWALN
RFATGELQPGRTRILYISPLKALNNDIRNNLSRPLAELTACFERKGEPFPVIRAQTRSGD
TPSGERRQMLRHPPEILITTPESLNLLLSSQSGLTLLQDLDTVIIDEAHSLLGVKRGAYL
ISAVERLVDLSGEFQRIALSATINPISVAADFISGYELDVTQPDYARHPQYRKRPITLVE
SNAAKQYRLSVNYPAAIAHRGADKHLWDALAETLLTRIQANRATLIFTNNRALCEKLTYK
INQAADAMVAYAHHGSLSREIRTEVEQRLKGGELAAIVATSSLEMGIDIGALDEVVLVQT
AGSVAAAIQRVGRAGHNVGDVSVGSLFPTHPQDFLESAVLAKAIMEKDLEPVRPLQCPLD
VLAQIIISMTGVATWDLDELYAHLRMSSVYHTLPRRQFDLLIDMLAGRYAESRIRELQAR
VSVDRLDNTVTARPGALLSLYQSGGVIPDRGYFHLRHQDSSARIGELDEEFVWEAKIGQS
FTLGAQFWQIQKITHNDVFVLPAKAGASTPPFWKAESISRNFHFSEQIGLFLKYLDANLD
ADDLVAALQSQYCMTEEAAASLLDFLRRQRAHTGRPLPHRHHLLVEIVDSILGHSHGRQM
VLHTGWGAEVNRPWGMALEAAWLESFGEQPVVYVSNECIVLQMPEEIPVEAILSLVSPER
IEALLRARLEGSGFFGARFRECAGRALLLNRGKFNERRPLWMSRLQSQKLLNSVLKYEDF
PILLETWRTCLQDEFDLLALKQLLEELRTGQVQWSVANTRTPSPMAQNIAWEQVNLYMYK
DDTPTSDKTSNLSEDLLRELLYNDALRPTVNAELCQRFVQKRQRLAPGYAPDSARDLLDW
IKERGAIPDSEWRELLARIESESGKEALQNMLAATEAKLIRLAHRDAQIIVARETQTSLA
QAFYPETDEDAESDALFDTLLGEWLRFYAPLSAAEISDWLGVDPQRLQRALDDLVEARAI
VAGPLIADDTEVRYCDRENFEILLHMARKEAAPEFAPLPLEQLSLFLHCWQTQASERDDD
PHERLFDILQRLQGTPAPAALWENEILPARLPDYSPAVLDHLFQESDLAWIGVEEGKTLF
SFTADLDLLDAPAPLNEANASELQALFPDADSRYDFQALSGKSGLDNTALTERLWDWVWK
QRINNDTYAALRRGVENKFTIPDLPAQSSGRPPSRRRAMRHSFAQSKQAANSPGTWRQVR
WPQRQEDPITEQERGKDRARLLLSRYGVVFRELLQRELPEMRWSAVFRSLRLMELSREII
GGYFFKDIPGPQFITPIALQMLQNGLSQTRIYWLNAADPASLCGLGLPGLKQRLPKRLDS
IHMTFMGPELIMTSRRNGKQLDIMIAPDHPDIEACLAPLRNLLYRPHQPLKSINLETING
EKAVDSPYLAPLSRMFDVQKGYKDVALNRNLL
NT seq 4419 nt   +upstreamnt  +downstreamnt
atgtcccaggcgctggctttatttcatccactcatcgcggaatggttcgccgccaatctg
ggcgcgcctacggatattcagagtaaggcctggccgcgcatcgcttccggcgaacattgt
ctgatcaccgcgcccaccggcagcggtaaaaccctcactgcttttctctgggccctcaac
cgcttcgccaccggcgagctgcaaccgggccgtacgcgcatactctatatttcaccactg
aaagcgctgaataacgatatccgcaataacctaagccgtccgctggcggaactgacagcc
tgctttgaacgcaagggcgagcccttcccagttatccgcgcgcagacccgcagcggcgac
acgccctctggcgagcgccgccagatgctgcgtcacccgccggagattctcatcaccacg
ccggaaagcctcaatctgctgctgagttcgcaaagcggccttactctgctgcaggacctg
gatacggtcatcatagatgaagcgcattccctgcttggcgtcaaacggggcgcttatctg
atctccgccgtggagcgtctggtggatctgtccggcgagtttcagcgcatcgccctgtcc
gccaccatcaacccaatctccgtcgccgcggactttatctccggctacgaactggatgtc
acccagccggactacgcgcgccacccgcaataccgcaagcgcccgatcacgctggtggag
tccaacgccgccaagcagtaccggctcagcgtcaattatccagccgccatcgcccatcgc
ggggcggataagcatctctgggacgctctggcggaaaccctgctgacgcgaattcaggcc
aaccgcgccaccttgattttcaccaataatcgcgccctgtgtgaaaagctcacttacaaa
atcaatcaggcggcggacgctatggtggcttacgcgcaccacggttcgctgtcgcgtgag
attcgcacggaggtggagcaacgcctcaaagggggcgaactggctgctatcgtcgccacc
agctccctggagatgggtattgatatcggcgcgctggacgaagtcgtgctggtgcagacc
gccggctcggtagcggcggcgatccagcgcgtgggtcgggccggtcataatgtcggcgac
gtcagcgtcggttctctgtttcccacgcacccacaggactttctggaatccgctgtcctg
gccaaagccatcatggaaaaagatctggagccagtgcgtccattgcaatgcccccttgat
gtcctggcgcagataattatctccatgaccggcgtcgcaacctgggacctggacgagctg
tacgcccatttgcgtatgtccagcgtctaccacacgttgccccgccgccagtttgatctg
ctgattgacatgctggcgggccgttacgcagagagtcgtatccgcgaactgcaggcgcgc
gtatccgtggatcgtctggacaataccgtcacggcgcgaccgggcgccttgctctctctg
tatcagtccggaggcgtgataccagatcgtggttactttcatctacgtcatcaggacagc
agcgcccgtatcggcgagctggacgaagagtttgtctgggaggcgaaaatcggacaaagc
ttcactctgggcgcgcaattctggcaaattcagaaaatcacccacaacgacgtattcgtg
cttcccgccaaagctggcgcctccacgccgccgttctggaaagccgagtccatcagtcgt
aatttccacttctccgagcaaattggcctgttcctgaaatatctggacgctaacctggac
gccgacgatctggtcgccgccttacagtcgcaatactgcatgacggaagaggcggccgcg
tctctgttggattttctgcgccgccaacgcgcccacacaggacgccccctgcctcatcgc
caccacctgctggtggagatcgtcgactcaatcctgggacacagccatggtcgtcagatg
gtgctgcataccggttggggcgctgaagtgaaccgcccctggggcatggctttggaagcc
gcctggctggaatccttcggcgagcagccagtggtatatgtcagtaacgagtgcatcgtc
ctgcaaatgccagaggagattcccgtcgaagcgattctctctctggtctccccggagcgg
atagaagccctgttacgcgcccgtctggaaggctccggttttttcggcgcacgcttccgg
gaatgcgcaggtcgggcgctactgctcaacagaggcaaattcaacgagcgccgtccattg
tggatgagccgcttgcaatcgcagaagttgctgaactccgtgctcaagtacgaagacttc
cccattctgctggaaacctggcgcacctgtctgcaggacgaattcgatcttctcgcgtta
aaacagctgctggaggagttgcgaaccggacaggttcaatggtccgtcgccaacacccga
acgcccagccccatggctcagaatatcgcctgggaacaggtcaacctgtacatgtataag
gacgatacgcccacctcggacaagacctccaatctcagcgaggacctgctgcgagagctg
ttgtacaacgatgcgctgcgtcccaccgtaaacgccgagttgtgtcagcgctttgtacag
aaacgccagcgcctggcgccgggttatgcgccggacagcgcgcgggacctgttagactgg
atcaaggagcgcggcgcgattccggattctgaatggcgcgaactgctcgcccgtattgaa
tcagagtccggcaaggaggcgctgcaaaacatgctggcggcgacagaggccaagctcatt
cgtctggcgcatcgtgacgcccagattattgtggcgcgggaaacccaaacttctctcgcg
caggctttctacccggaaaccgacgaggatgcggaatccgatgcgctgttcgatacgctg
ctgggcgaatggctgcgcttttacgcccccctctccgccgctgagataagcgactggctt
ggcgtcgatccacaacgcctgcaacgcgccctcgacgatctggttgaggcgcgcgctatc
gtggccggcccgctgatcgcagacgatactgaggtgcgctattgcgaccgggaaaacttc
gaaatcctcctgcatatggcgcgcaaggaagccgcgccggaattcgcccccctccccttg
gaacagctatccttgttcttacattgctggcagacccaggcgagcgagcgtgacgacgat
ccgcacgagcgactgtttgatattttgcagcgcctgcaaggaacgcccgccccggccgca
ttgtgggagaacgaaatactccctgcgcgcttgccggactacagcccggcggtgttggat
cacctgtttcaggagtccgatttggcgtggattggcgtagaggaaggcaaaaccctattc
agcttcaccgctgatctggatctgcttgacgcccccgcgcctctgaacgaagcaaacgcc
agcgaactgcaggccctgtttccagacgccgacagccgctacgatttccaggccctttcc
ggcaaaagcggactggacaacacagcgctgacggaacgcttatgggattgggtatggaaa
cagcgcatcaataatgacacctacgccgcactgcgcagaggagtggaaaacaaattcacc
attcctgatctgcccgctcagagctccggcagaccgccttcacgccgacgcgccatgcgc
cactccttcgcccagtcaaaacaggcggcgaacagccccggaacctggcgccaagtacgc
tggccccagcgccaggaagacccgataacggaacaggagcgcggcaaagaccgtgcgcgt
ttactgctgagtcgctacggcgtggtgtttcgcgagctcctgcaaagagagcttccggag
atgcgttggagcgccgtcttccgttctctgcgcctgatggagctatccagagagatcatc
ggcggctactttttcaaagatattcccggcccacagttcattacacccatagcgctgcaa
atgctgcagaacggcctgtcgcagacgcgcatatactggctcaacgccgccgatcccgcc
tctctttgcgggttggggctgccgggcctgaaacagcgactgccgaagcgtttggactct
atacatatgacgtttatggggccggagctgatcatgacctcccgccgcaatggcaaacag
ttggacatcatgattgcgccagaccatccagatatcgaggcctgtctggcgcctttacgc
aacctgctgtatcgaccccatcagccgctcaaaagcatcaacctggaaaccattaacggc
gagaaagccgtggacagcccctacctcgcccctctgagccgaatgttcgacgtgcagaag
ggatacaaggacgtcgcgctcaaccgcaacctgctgtga

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