Hahella sp. HNIBRBA332: O5O45_17355
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Entry
O5O45_17355 CDS
T09430
Symbol
rlmD
Name
(GenBank) 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD
KO
K03215
23S rRNA (uracil1939-C5)-methyltransferase [EC:
2.1.1.190
]
Organism
hahh
Hahella sp. HNIBRBA332
Brite
KEGG Orthology (KO) [BR:
hahh00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
hahh03009
]
O5O45_17355 (rlmD)
Enzymes [BR:
hahh01000
]
2. Transferases
2.1 Transferring one-carbon groups
2.1.1 Methyltransferases
2.1.1.190 23S rRNA (uracil1939-C5)-methyltransferase
O5O45_17355 (rlmD)
Ribosome biogenesis [BR:
hahh03009
]
Prokaryotic type
rRNA modification factors
23S rRNA modification factors
O5O45_17355 (rlmD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
tRNA_U5-meth_tr
Methyltransf_31
Methyltransf_25
Methyltransf_11
Methyltransf_15
PCMT
TRAM
Methyltr_RsmB-F
TRM5-TYW2_MTfase
MTS
Ubie_methyltran
Methyltransf_23
RrnaAD
DREV
PrmA
Methyltrans_SAM
CMAS
Motif
Other DBs
NCBI-ProteinID:
WLQ11507
LinkDB
All DBs
Position
complement(3930179..3931519)
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AA seq
446 aa
AA seq
DB search
MSRRRKKLPQESITCEIESLSHEGRGVSHKDGKTLFVEGALPGETVTARYVNSRRSYDEL
AVEEVLTQHPQRIEPDCQFSKLCGGCSMQHVNLGFQIKHKESVLLDHLRHFGDLKPEQVV
PPLVGAGRGYRTKARLGVRYVAKRDEVLVGFRERYSNFLTAIDECPVLIESVGGRIPELK
ALIRGLSGYQRIPQIEVAAGDDVCALVIRHMDPLTEEDLQKLIDFSEQIGLAIYLQPKGP
DTVAKLWPKDGQELLSYQLSDYDLTMQFHPMDFTQVNRDINRRMLAQALEWLQPQAGETI
LDLFCGLGNFTLPIARTAAHVVGVEGSEDMVRRGYANAELNGVSNVEFHAADLHLPLAPA
NEAKHAWLRIYDKVLLDPPRSGAEELAKQMTRFGAKRIVYVSCNPATLARDAGILAAQGY
RLIKAGVMDMFPHTAHVESMALFEKA
NT seq
1341 nt
NT seq
+upstream
nt +downstream
nt
atgtctcgtcgtagaaagaagttaccccaagagtccattacctgcgaaatcgaatctctc
agtcacgaagggcgtggcgtctcccataaagacggcaaaaccctgtttgtcgaaggtgct
ttgcccggcgaaaccgtgactgcgcgatatgtaaacagtcgtcgcagttatgatgagctt
gctgtagaagaagtgctgacgcagcatccacaacgtattgagcctgactgccaattctcc
aaactgtgcggcggctgcagcatgcagcatgttaacctgggctttcagatcaaacacaaa
gagtctgtattactggaccacttgcgccattttggcgatttaaagccggaacaggttgtt
cctcccttggtgggcgcggggcgcggttatcgcacaaaagcgagactgggcgtacgttac
gtggccaagcgagatgaagttcttgtgggcttccgcgaacgttacagtaatttcctgacc
gccattgatgaatgcccggtattgatcgagtccgtcggcggccgcattcctgaactgaaa
gcgctgatccgaggcctctccggctatcaacgtattcctcagattgaagtggcggcgggt
gatgatgtttgcgccttggtgattcgtcacatggacccgctcactgaagaagatttgcaa
aaactgatcgatttctcagaacaaatcgggttggcaatttatttgcagccgaaaggtcct
gacacggtcgccaaactatggccgaaagatggtcaggagctgcttagttatcaattgagc
gactatgatttgacgatgcagttccatcctatggacttcactcaggtcaaccgcgatatc
aaccgccgtatgttggcgcaggctctggaatggttgcagccgcaggctggcgagaccatc
ctcgacttgttttgcggactgggtaacttcactttgcctattgcccgtacggcggcgcat
gtcgtaggggtagagggcagcgaggatatggtgcgccgaggctacgccaatgcggaactt
aatggcgttagcaacgtagagtttcatgcggcggacctgcatcttccattggcgccggcg
aatgaggcgaaacatgcatggctgcgcatctatgacaaagttctgttggatccgccgcgc
tctggcgcggaagagttagcgaagcaaatgacccgttttggggcgaagcgaattgtttat
gtgtcctgtaaccccgctactttggcgcgggacgccggcattctggcggcgcagggatac
aggctgatcaaggccggggtaatggatatgttcccgcatacggcccatgtcgagtcaatg
gccttattcgagaaagcataa
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