Hahella sp. HNIBRBA332: O5O45_24305
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Entry
O5O45_24305 CDS
T09430
Symbol
recB
Name
(GenBank) exodeoxyribonuclease V subunit beta
KO
K03582
exodeoxyribonuclease V beta subunit [EC:
3.1.11.5
]
Organism
hahh
Hahella sp. HNIBRBA332
Pathway
hahh03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
hahh00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
O5O45_24305 (recB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
hahh03400
]
O5O45_24305 (recB)
Enzymes [BR:
hahh01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
O5O45_24305 (recB)
DNA repair and recombination proteins [BR:
hahh03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
O5O45_24305 (recB)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
UvrD_C_2
AAA_30
PDDEXK_1
AAA_22
AAA_11
DEAD
ResIII
DUF349
AAA_25
Motif
Other DBs
NCBI-ProteinID:
WLQ12854
LinkDB
All DBs
Position
5499894..5503439
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AA seq
1181 aa
AA seq
DB search
MKPLDPIAIPLQGVQLIEASAGTGKTYTITTLYLRLLLERQLDVRQILVVTFTRAATEEL
HTRIRQRIREVMQTLQAPPETDIPEWLALWRDPERNEDALALLQQALLNMDEASIFTIHG
FCQRALQDNAFESGLLFDLRLQEDLGPLLQQAAEDTWRKQFYPDRLLAELAQAKWGEPAE
MLNGLRSYLAQGDLELIPPDVDPQTLSHLAGVLKAQWRQLGDELTAAVREAAENKILGRA
EKTYREDKLNDAILSLTIWSRTEEQMTLPPAAALFSQRVLDASVLKKAADKGLGAPQHAF
FSALEQFLTQQSQLDAWLVGATLTTFRDVLRRLKTQAEILGFDDLIGSLKDALEAATGPQ
LRLALQRRYPVALIDEFQDTDPSQYRIFSSLYDAADSNATLFMIGDPKQAIYSFRGADIY
AYLQAKQRTPQDNRYTMDTNWRSRKELVAAVNGLFEQCANPFLFAGDIEFIPVQAAGAAD
ASVLTLDGVPVTPLQAWLLGREDSGKNISKEQARPQLAQITASEIANWLNLGEDGRARLG
DRPLSAGDIAVLVRDNNQARIMSEKLSAVGVSSVFLTRESVYQSEEATDLLRLLRALLEP
NDERRLRAALVTLSWGWTAPELETLARDEQRWESMLTSLHQLREEWQDAGFMPMFQKWLQ
NFSIAARLLGLPEGERRLTNLLQLAELLQQAGRDYPTPERLLAWYQGQLEQADGRGDEHQ
LRLESDEALVKIVTIHSSKGLEYPLVFLPFLGFGRSGKDDYLMCHDPEREHRLVLDLSGG
DRLQEQAERERLAEDLRLLYVALTRAKQLCVWAWGAVNEFQYAAMAWLLYGGATDNLTDW
LTSLKNLDDTQLAEPLTRLAAQTDFCWSLAPEPVHQRRHPGEGAGQWRARSAQRTVEQNW
RLSSYSQLASGGGGRHHEEPLDEAAPVQEVQPRLQPDVSDIFQFPKGAWAGQCFHHILEN
MPLQAENAEVLHELTSHSLQQHGFGDEWVACVSEQLWQVVNTPLMENGGAPFSLSQLDKA
NMQVEMEFLFPVTLIQQARLARFLADYSGSETPVNLNVAAHEGLMHGFIDLTFQHEGRFY
IVDYKGSWLGEKRESYAQENLRNEILAHRYDLQYLIYTLALHRYLQRSLPDYDYDAHFGG
VYYLFLRGMHSQRQPELGVFFDRPSQAAVAAFAEILQGEPA
NT seq
3546 nt
NT seq
+upstream
nt +downstream
nt
atgaagccgctggacccgatcgccattcccctgcagggcgtgcagctcattgaagccagc
gccggcacggggaaaacctacaccatcaccaccttgtatctgcgcctgctgctggagcgc
cagctcgacgtcaggcagattctggtggtcaccttcactcgcgccgccacggaagagctg
cacacacggattcgtcagcgcattcgtgaggtcatgcagaccttgcaggcgccgccagaa
acggacatcccggaatggctcgcgctctggcgcgatccggaacgcaacgaggatgctctc
gccctgttgcagcaggcgctgttgaatatggacgaggcgtctatcttcaccattcacggt
ttctgccagcgcgctctgcaggacaacgcatttgaaagcggactcttgtttgatctgcgt
ctgcaggaggacttaggtccgttgctgcaacaagcggcggaggacacttggcgcaagcag
ttctacccagaccggctgctggcggagctggcgcaggccaagtggggcgagccggcggaa
atgctgaatggcctgcgcagttatctggcgcaaggcgatctggagttgattccccctgat
gtggatccgcagaccctcagtcatctggccggcgtgctgaaagcccaatggcgccaattg
ggcgacgaactcaccgccgccgtgcgggaggcggcggagaacaaaattctggggcgcgcg
gagaaaacttaccgggaagacaaactgaacgacgccattctcagcctgactatctggagc
cgcacggaagagcagatgacgctgccccccgccgcggccctgttcagtcagcgcgttctt
gacgcatccgtgctgaaaaaggcggcggacaaaggtcttggcgcgccacagcatgctttt
ttcagcgccctggagcagtttctgacccaacagtcacagttggacgcatggctggtgggc
gccacgctgaccaccttcagagacgtattgcgacgcctgaaaacccaggcggaaattctg
ggcttcgatgacctgatcggcagtctcaaagacgccctcgaagccgccaccgggccccag
ttacgcctggcgctgcaacgccgctatccggtcgctctaattgacgaattccaggatacc
gacccgtcccagtatcgtatcttttcctccttatatgacgccgctgacagcaacgccaca
ctgtttatgatcggcgaccccaagcaggcgatttacagcttccggggcgcggatatttac
gcctacctgcaagccaagcagcgcacgccccaggacaatcgctacaccatggacaccaac
tggcgctcccgcaaagagctggtggccgcggtcaatggattgttcgaacagtgcgccaac
cccttcctgttcgccggcgacatcgagttcattcccgtacaggccgccggcgccgctgac
gcttccgtcctgaccctggacggcgtcccggtgacgccattgcaggcctggttgcttggt
cgtgaagacagcggcaaaaacataagtaaagaacaagcgcggccgcagttggcgcaaatc
accgccagtgaaatcgccaactggctcaacctgggagaggacggccgcgctcgcctgggc
gaccgcccactcagcgccggcgatatcgctgtactggtgcgggataataatcaggcccgc
atcatgtcggaaaagctctccgccgtcggcgtcagcagcgtgtttctgacgcgggaaagc
gtctatcaaagtgaagaggccaccgatctgctgcgcctgttgcgcgccttgctggagccc
aatgacgaacgccgcctgcgcgcggcgttggtgaccctgagctggggttggaccgccccg
gagctggaaacgctggcccgggatgaacagcgctgggagagtatgctgacgtcattgcat
cagttacgggaagaatggcaagacgccggtttcatgcccatgtttcagaaatggctgcag
aacttcagcatcgccgccagactactgggcctgccagaaggcgagcgccgtctcaccaac
ctgttacagttggcggaactactgcaacaggccgggcgcgactaccccacgccagagcga
ctgctggcctggtatcaaggacaattggagcaggcggacggacgcggcgatgagcatcag
ttacgcctggaaagcgacgaggcgctggtgaaaatcgtcaccattcacagttccaaaggc
ctcgaatatcccttggtgtttctaccttttctgggatttggccgcagcggcaaagacgat
tatttaatgtgccatgaccctgaacgggagcaccgtctggtgctcgatcttagcggcggc
gaccgcttacaggagcaggcggaacgggagcgtttggcggaagatctgcgtctgctttac
gtcgcgctgacccgggccaaacaactgtgcgtctgggcctggggcgccgtaaatgagttc
cagtacgccgccatggcgtggctgctttatggcggcgcgacggacaatctgaccgactgg
ctgacgtccctgaaaaatctggacgatacgcaacttgcggagcccctgacccgccttgca
gcgcagaccgacttttgctggagcctggctcctgagccggtgcatcagcgccgtcatccc
ggcgaaggcgccggccagtggcgggcgcgctccgcccagcgcaccgtggagcaaaactgg
cgtttatccagttactcgcaactggcctccggaggcggcggtcgccatcacgaagagccc
ttggatgaggccgcgccggtacaggaagtacagcctcgcctgcagccggacgtcagcgat
atttttcagtttcccaaaggcgcctgggcgggtcagtgtttccaccatattctggagaat
atgccattgcaggcggaaaacgccgaggtgttgcatgagctcaccagccacagcctgcaa
caacacggcttcggcgatgaatgggtggcctgcgtttcggaacaattatggcaagtggtg
aacacgccgctaatggagaacggcggcgcgcctttttcactgtcgcaactggacaaggcc
aatatgcaggtggaaatggagtttctcttccccgtgacgctgattcagcaagcgcggctg
gcgcgtttcctggcggactactccggctctgaaacgccggttaatctgaacgtggctgct
catgagggcctgatgcacggctttatcgatctcaccttccagcatgagggacgcttctat
atcgtcgattacaaaggcagttggctgggagaaaaacgcgagagctacgcccaggaaaat
ctgcgcaacgaaatccttgcgcaccgctatgacctgcagtacctgatctatacgctggcg
ttgcatcgctacctgcaacgcagcttgcccgactacgattacgacgcccacttcggcggc
gtgtactatttgtttttgcggggcatgcacagtcaacgccagcccgaattgggcgtattt
ttcgatcgtccctcccaggcggcggtggccgcgtttgctgagattctgcagggagaaccg
gcatga
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