Hahella sp. HNIBRBA332: O5O45_26220
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Entry
O5O45_26220 CDS
T09430
Name
(GenBank) VacB/RNase II family 3'-5' exoribonuclease
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
hahh
Hahella sp. HNIBRBA332
Pathway
hahh03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
hahh00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
O5O45_26220
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hahh03019
]
O5O45_26220
03016 Transfer RNA biogenesis [BR:
hahh03016
]
O5O45_26220
Enzymes [BR:
hahh01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
O5O45_26220
Messenger RNA biogenesis [BR:
hahh03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
O5O45_26220
Transfer RNA biogenesis [BR:
hahh03016
]
Prokaryotic type
tRNA degradation factors
O5O45_26220
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
OB_RNB
S1
Motif
Other DBs
NCBI-ProteinID:
WLQ13231
LinkDB
All DBs
Position
complement(5941076..5943049)
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AA seq
657 aa
AA seq
DB search
MLNSDALSQLKQFKQDLRIANNRFEGTVKGSPGRFGFAVLDDGRECFLNPDEMQKVFPGD
RILVEVSQDDKGRDVAKVVQHMRSELKYFVGRYFTRGQGHFVEPDLMGMNRWIFIPPKKR
QQAHVNDLVLCRVLQHPFPEGKPQAEVVKIIGKPGASGLEVNYMLAKYNLQAHNRASINE
AELQKQVAAELEKRKDLRETPFVTIDAASTQDMDDALFATAKPEGGWELLAAIADPSTLI
PEGGDIDKYAQRLGSSFYFADRTLPMLPAKLANHFCSLKSGEDRLALVCTMQVDADGAIS
SYSIEEAAIRCAANLAYEEVATALASGDASAHAHGATLQALNDVRTALASHRREHALVNE
DRPDYQLELDENGKVKNIHRKINSVAHSIVEEAMVAANRCAADFLKQNTEHSLYTSHSGF
RPERLDQIKQIVSEQISDYDCSDLHTWEGFKKFMDFLDANPPEVPVKAIANRLLARGALS
DQPCPHFGMGLPHYTTFTSPIRKYVDLSIHRQIKGVLKNQKPHTLNDKAIQQLQESLRAG
RSAVNESETWLKCEYAQTLIGKTFDGVVQHTTGSGFQARLDENGIEGMVNLGALQEKFRF
DGTYFQHTGEHRQFRLEQPVKVTISAVDMEKKLIQMELAEPAPVAQPVTAEEPQAEQ
NT seq
1974 nt
NT seq
+upstream
nt +downstream
nt
atgttaaattccgatgctttaagccaattgaaacagttcaaacaagacctgcgtatcgcc
aataaccgttttgaaggaacggtgaaaggcagtccggggcgttttgggtttgctgtgttg
gatgacggcagagagtgcttcctgaacccggacgaaatgcagaaagtatttccgggcgac
cgaattctggtggaagtcagccaggacgacaaaggccgcgatgtcgccaaagtcgtgcaa
cacatgagaagtgagctgaagtatttcgtcggccgttatttcacccgtggtcaaggccat
ttcgtcgagcctgacctgatgggcatgaaccgttggattttcattccgccgaagaagcgc
cagcaggcacacgtcaatgatctggttctgtgccgcgtcttgcagcatcccttccctgaa
ggcaagccgcaggccgaagtggtgaaaatcatcggcaagccaggcgcatctggcctggaa
gttaattacatgctggccaagtacaatctgcaggcgcacaatcgcgcctccatcaacgaa
gcggagctgcagaaacaagtcgccgctgagctggaaaagcgtaaagacctgcgggaaaca
cccttcgtcacgatcgacgccgccagcactcaggatatggacgacgccctgttcgccacc
gccaagcctgaaggaggctgggagctgctggcggccatcgcagacccgtccacactgatt
ccggaaggcggcgatattgacaaatacgcgcagcgcctgggcagttctttctacttcgcc
gaccgcaccttacctatgttgccagccaaactggccaaccacttctgttcactgaagtcc
ggcgaagaccgtctggctctggtttgcacaatgcaggtcgacgctgatggcgctatttcc
tcttacagcattgaagaagccgccattcgttgcgccgccaatctggcttacgaagaagtc
gccaccgctttagcctctggcgacgccagcgcccatgcccacggcgcgactttgcaggct
ctgaatgatgttagaaccgcactggccagccatcgccgtgaacacgcgctggtgaatgaa
gaccgtccggactatcagttggagctggatgagaacggcaaggtcaaaaacatccatcgc
aagatcaacagcgtcgcccattccatcgtggaagaagcgatggtggccgccaaccgttgt
gcggcggacttcctgaaacagaataccgagcattccctgtacacctctcatagcggtttc
cggccggagcgtctggatcagatcaaacaaatcgtctccgaacagatctctgactacgat
tgcagcgacctgcatacatgggaaggcttcaagaaattcatggacttcctggacgcaaat
ccgccggaagtgcctgtgaaggcgatcgccaaccgcttgctggcgcgtggcgcgttgtct
gaccagccctgccctcatttcggcatgggactgcctcactacaccaccttcacgtccccg
attcgcaagtacgtggacctgagcattcatcgccagatcaaaggcgtcttgaagaatcag
aagccgcacacactgaacgacaaagccatccagcaactacaggagtctctgcgcgccggc
cgtagcgccgtgaatgagtccgagacctggctgaagtgcgaatatgcgcagacgctgatc
ggcaagaccttcgatggcgtggtgcagcacactactggctctggattccaggcgcgtctg
gatgagaatggcattgaaggcatggtgaatctgggcgccttgcaggagaagttccgcttc
gacggcacctacttccagcacactggcgagcatcgccaattccgcctggagcaaccagtg
aaagtcaccatcagtgcggtcgacatggagaaaaaactgattcagatggagctggcggag
cctgccccggtagcgcagcccgttacagcggaagagccgcaagccgagcaataa
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