Hahella sp. HNIBRBA332: O5O45_29135
Help
Entry
O5O45_29135 CDS
T09430
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
hahh
Hahella sp. HNIBRBA332
Pathway
hahh03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
hahh00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
O5O45_29135 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
hahh03021
]
O5O45_29135 (rpoC)
03400 DNA repair and recombination proteins [BR:
hahh03400
]
O5O45_29135 (rpoC)
Enzymes [BR:
hahh01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
O5O45_29135 (rpoC)
Transcription machinery [BR:
hahh03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
O5O45_29135 (rpoC)
DNA repair and recombination proteins [BR:
hahh03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
O5O45_29135 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
RPOC_hybrid
Apocytochr_F_C
Motif
Other DBs
NCBI-ProteinID:
WLQ13789
LinkDB
All DBs
Position
6547458..6551648
Genome browser
AA seq
1396 aa
AA seq
DB search
MKDLLNLLKNQNYAHEFDSIRISLASPDMIRSWSFGEVKKPETINYRTFKPERDGLFCAK
IFGPIKDYECLCGKYKRLKHRGVICEKCGVEVAPANVRRERMGHIELASPVAHIWFLKSL
PSRIGLLLDMTLRDIERVLYFESFIVIDPGMTTLEKGQLLSDEQYYEALEEFGDEFDARM
GAEAIQGLLADLELEDEIERLREEIPNTNSETKIKKLSKRLKLMEAFAESGNHPEWMILT
VLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLELNAPDIIVRNEKRMLQ
ESVDALLDNGRRGRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVIVVGPT
LRLHQCGLPKKMALELFKPFIFSKLEHRGLATTIKAAKKMVEREEAVVWDILDEVIREHP
VMLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCTAYNADFDGDQMAVHVPLTLEAQLEA
RALMMSTNNILSPANGDPIIVPSQDVVLGLYFMTRERINAKGEGMVFSDIKEVQRAYGAK
KVDLQAKVKVRIRDVVIDEERNKTVTVSVLDTTVGRALLFDIFPEGLAFSLVNQNMTKKA
ISRLINACYRRVGLKETVIFADQIMYTGFYYATLSGASIGVNDFVIPDEKAKIIDAAENE
VKEIESQFASGLLTQGEKYNKVIDIWSRANDKVSKAMMDRLGKEKVVNKDGKEVDQDSFN
SVYIMADSGARGSAAQIRQLAGMRGLMAKPDGSIIETPITANFREGLNVLQYFISTHGAR
KGLADTALKTANSGYLTRRLVDVAQDLVVTDLDCGTSEGLLVTPHIEGGDVVVPLGDRVL
GRVTASDVYSASDNQNVVVPAGTLLDETTVETLEKAGVDEILVRSPITCETKYGVCASCY
GRDLARGHLVNVGEAIGVIAAQSIGEPGTQLTMRTFHIGGAASRASAVDNIQVKHGGTVR
LHNLKHIERKNGNLVVVSRSSALAIADEAGREREWYKLPYGVELSVKQGQQVAAGEIVAK
WDPHTHPIITEVGGKAIFVGVEEGITVKTQTDEITGLSNIEVMDPKDRPASGKDIRPMLQ
LLDANGKEMKFPGTDTPVQYFLPPNSLFSLKNGDTVEVGDVIARIPQESSKTRDITGGLP
RVADLFEARKPKEPSILAEISGIVSFGKETKGKKRLVITPTDNTDPFEILIPKWRQLNVF
EGESVERGEVISDGPSNPHDILRLLGVGELAKYIINEIQDVYRLQGVVINDKHIEVIVRQ
MIRKVDVLSSGDTTLIKGDQVELVKVLEENEKAEEETKMPARYERVLLGITKASLATESF
ISAASFQETTRVLTEAAVTGKQDHLRGLKENVVVGRLIPAGTGSAYHQERKRKRMQKEGG
VSAADVVQALSAELNK
NT seq
4191 nt
NT seq
+upstream
nt +downstream
nt
atgaaagatttgctgaacttacttaaaaaccagaactacgctcacgagtttgactcgatt
cgtatttccttggcgtcgcctgatatgatccgttcatggtcatttggtgaagtcaaaaag
cctgaaaccattaactacagaactttcaagccggaaagggacggcctcttctgcgccaaa
attttcggcccaatcaaagattatgaatgtctttgtggaaaatataagcgtctcaagcat
agaggcgttatttgtgagaagtgcggcgtagaagttgctccggccaatgttcgtcgtgag
cgtatggggcatattgaattggcctcgccagttgcgcatatctggtttttgaaatctctt
ccttcgcgtatcggcttgctgttggatatgactctgcgtgatatcgaacgcgttttgtat
ttcgagtcattcatcgtcattgatccaggcatgactacccttgaaaaagggcagctgctt
tctgatgagcagtattacgaagctttggaagagttcggagatgaatttgacgcacgcatg
ggcgccgaagcaatccaaggactgctggctgatttggagttagaggacgaaattgagcgt
cttcgtgaagaaattccaaatactaactccgagactaaaatcaaaaagctatccaagcgt
ttgaagcttatggaggcttttgctgagtccggaaaccatccggaatggatgatcctgact
gtattgccagttctgcctcctgatctgcgtccattggtgcctcttgacggtggtcgattc
gctacaagtgacttgaatgatctgtatcgtcgtgtcatcaaccgaaataaccgtttgaag
cgcctattagagctgaatgctccagacatcatcgtacgtaacgagaagcgaatgttgcag
gagtctgtggacgcactgctggataacggtcgtcgcggtcgtgcgattaccggttccaat
aagcgtccgctgaagtctttggctgacatgatcaaaggtaagcagggccgtttccgtcag
aaccttcttggtaagcgggttgattactcgggtcgctccgtaatcgtcgtagggccaact
ttgcgtctgcatcagtgtggtttgcccaagaagatggcgctggagctatttaagccgttt
attttctccaagcttgagcatcgtggtttggctacaacgattaaagcagccaagaagatg
gtcgagcgtgaagaggctgtggtttgggatattctggacgaggttatccgggaacaccct
gttatgttgaaccgtgcgccaactcttcaccggttgggtattcaagcgttcgaacctgtt
ctgatcgaaggtaaagcgatacagttgcatccgttagtgtgtacagcatataacgctgac
tttgacggtgaccagatggctgtacacgttcctctgacgttggaagctcagttggaagcg
cgtgcgttgatgatgtctacaaacaacatcctttcgcctgctaacggggatcctattatt
gttccttcgcaggacgttgttcttggtctctactttatgaccagggagcgaattaatgcc
aagggcgaggggatggtgttctccgatattaaggaggtccagcgcgcctacggagctaag
aaggttgacctccaggcgaaggtcaaagttcgaattcgcgacgtagtcatcgacgaagag
cgcaacaagactgtcactgtgtctgtacttgatacgactgttggtcgagcgttgctattt
gatattttccctgaaggtctcgcgttctcgctggttaaccagaacatgacgaaaaaggcg
atttcacgtttgattaacgcctgctaccgtcgagttggtctaaaggaaacggtcattttt
gctgaccagataatgtataccggcttttattacgcgactctctcgggagcatcaattggt
gtgaacgacttcgttattcctgatgagaaggcgaagattattgacgctgcggaaaatgaa
gttaaagagattgaatcgcagtttgcttccggtctgctaactcagggcgagaagtacaac
aaggttatcgatatttggtcgcgcgccaacgataaagtctccaaagcgatgatggatcgt
cttgggaaagaaaaagtcgttaataaggacggtaaagaagtcgatcaggattcctttaac
tccgtttacatcatggctgactctggcgcgcggggttctgcggctcagattcgtcagttg
gctggtatgcgtggcctgatggcgaagcccgatggatctatcatcgagacgcctattacg
gctaacttccgggaaggtctgaacgttctccagtactttatatctacgcacggggcgcgg
aaggggctggcggatacagcattgaaaactgctaactctggatacttgactcgtcgtctg
gttgatgtcgcccaagatttggttgtaactgatttggattgcggtacttccgaaggtctg
ctggttactcctcatattgaagggggggatgttgttgttcctctgggcgatcgagtgctg
gggcgtgtcacagcaagcgatgtgtactccgcatccgacaaccagaatgttgttgttcca
gcgggaacattgcttgacgagacgactgtagaaacgcttgaaaaggctggtgttgacgag
attttggttcgctctcctattacttgtgaaaccaaatatggcgtctgtgcaagctgttat
ggtcgtgatctggcgcgtggccacttggttaacgtcggtgaagctattggtgtaatcgct
gcccagtccatcggtgagcctggaactcagctgacgatgcgtactttccacatcggtggt
gcggcatcgagagcttctgcagtcgataacattcaagttaagcatggcggaactgtccgt
ttgcataaccttaagcacatcgagagaaagaatggcaatctggttgttgtctctcgatca
tcagctttggcgattgcagacgaagccggtcgggaaagggagtggtataaacttccttac
ggcgttgagctgagcgtgaagcaaggacagcaggttgcggcaggcgaaatcgtcgccaaa
tgggacccgcatacgcacccgattatcacagaggttggtggtaaagcgatctttgttggc
gttgaagagggtattactgttaagacccagacagatgaaattacaggtctgtcgaacatt
gaggtaatggatccgaaggatcgcccggcttctggaaaagatattcgtccgatgctgcaa
ttgctggatgctaatggcaaagagatgaagttcccaggtactgatacgccagtacagtac
ttcctgcctccaaactcacttttcagtttgaagaatggggatactgttgaagttggtgat
gtaattgcgaggattccgcaagagtcatctaagacacgggacattacaggtggtctgcca
cgagttgccgacttattcgaggctcgtaagcctaaagagccatctattcttgctgaaatt
tcagggatcgtttcgtttggtaaagaaacgaaagggaagaaacgtcttgttattacgcca
accgataatactgatccgtttgagattttgattcctaaatggcgtcagctaaacgtattc
gaaggtgagagcgtagaaagaggagaggttatctcagacggcccatctaatccgcacgac
atcttaagattgttgggggttggtgagctggccaagtacatcattaacgaaattcaagac
gtataccgtctccaaggcgttgttataaacgacaagcatattgaagttatcgtgcgccaa
atgattcgtaaggttgatgtattgagctctggggataccactctcattaaaggagaccag
gttgagctggtaaaagtcctggaggaaaacgagaaagcggaagaagaaacgaagatgcct
gcgcgttacgagcgagtattgctgggtataactaaagcatctttggcgacagaaagcttc
atttccgcagcatcgttccaggaaactactcgcgttttgaccgaggcggctgtaactggc
aagcaggatcacttgcgtggtttgaaagaaaacgtggttgtagggcgactgattcctgct
ggaacgggttcggcttaccaccaagagagaaaacgcaaacgtatgcagaaggaaggcggc
gttagcgcggcagatgttgttcaggcgttgagcgcagaactgaataaataa
DBGET
integrated database retrieval system
