Hahella sp. HNIBRBA332: O5O45_31365
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Entry
O5O45_31365 CDS
T09430
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
hahh
Hahella sp. HNIBRBA332
Pathway
hahh03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
hahh00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
O5O45_31365
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hahh03019
]
O5O45_31365
03009 Ribosome biogenesis [BR:
hahh03009
]
O5O45_31365
Enzymes [BR:
hahh01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
O5O45_31365
Messenger RNA biogenesis [BR:
hahh03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
O5O45_31365
Ribosome biogenesis [BR:
hahh03009
]
Prokaryotic type
rRNA helicases
O5O45_31365
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
AAA_22
CMS1
Arginosuc_synth
HEM4
Cas3-like_C_2
Motif
Other DBs
NCBI-ProteinID:
WLQ14219
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All DBs
Position
7042846..7044627
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AA seq
593 aa
AA seq
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MSSTDSATALSKDFASLGLSDSLLSALKDVGYEQPSPIQEQSIPLLLQGESILGVAQTGT
GKTAAFALPLLERLDPKIQSPQIIVLAPTRELAIQVAEAFKSYSRYLPDFTVLPIYGGQD
MRGQLRSLKRGVQVIVGTPGRVLDHLQRKSLDLSQIRAVVLDEADEMLRMGFIDDVEEIL
SNAPGECQYALFSATMPPAIKRVAEKYLKGAKEVRIAAKTSTVERISQHVLMVDNSHKLD
ALTRVLEVENFEGMIIFVRTKSATTELAEKLQARGYAAEALNGDQTQKIREQTIDRLKKG
RLDIVVATDVAARGLDVERIGLVLNYDIPYDTEAYVHRIGRTGRAGREGKAILFAAPKER
RLLRAIEMATKQPLTPYEAPSAEKISEQRIQQFQENLHRTLDGQDLESMKKVVLDFCQEN
ELSLEVVAAALAFRLQVEQPLFPILKDLPKLDKDFRGRDRDRDGRGRNPRDRDRRGREGR
EGREGRDSRRDDGIPRERYRIEVGRSHDVSPGDIVGAIANEANIESKYIGHIAIYDNFST
VELPEGMPKEVLQHLQKVRIRQQLINMKPDAGKPERKPRSGRGGPRPAKRPRS
NT seq
1782 nt
NT seq
+upstream
nt +downstream
nt
atgtcttcaactgattctgcaaccgcgctgtcgaaagatttcgcttctcttggtttatct
gattctcttttgtccgctcttaaagacgtgggttatgagcaaccctcaccgatccaggag
caaagtattcccctgttgctgcagggcgagagcattttaggggtggcgcagactggtacc
ggcaagacagcggctttcgctctgccgttgttagaaagactggatccgaaaattcagtct
ccacaaattatcgtgctggctcccacccgggaactggcgatccaggtagcggaagcattc
aagagctattcccgttacctgcctgacttcacagtgctgccgatctacggcggtcaggat
atgcgcggacaattgcgctccctgaagcgcggcgtgcaagttattgtcggcacgcctggc
cgtgtgttggaccatttgcagcgcaagagcctggatttgtcgcaaatccgcgcagtcgta
ctggacgaagctgacgaaatgctgcgcatgggctttatcgacgacgttgaagaaatcctc
tccaacgcgcccggcgaatgccaatacgcgctgttctctgcgaccatgcctcccgccatc
aagcgcgtggcggaaaaatatctgaaaggggcgaaagaagttcgcatcgccgccaagact
tccaccgttgagcgcatcagccagcacgtattgatggttgataactctcataagctggac
gcgctgacccgcgtgctggaagtcgaaaacttcgaaggcatgatcattttcgtgcgcacc
aagtccgccaccacggaactggctgaaaagctgcaggcgcgtggttacgccgctgaagcg
ctgaatggcgatcagacgcagaagattcgtgagcagaccatcgaccgtctgaagaaaggc
cgtctggatatcgttgtcgccactgacgtggctgcgcgcggtcttgacgtagagcgtatc
ggtctggttctgaactacgacattccttacgacaccgaagcctacgttcaccgtatcggc
cgtaccggccgcgctggtcgtgaaggcaaggcgatcctgttcgcagcgccgaaagagcgt
cgcttgctgcgcgcgatcgaaatggccaccaagcaaccgctgaccccttatgaagcgcct
tccgctgagaagatcagtgagcagcgcatccagcagttccaggaaaacctgcaccgcact
ctggacggccaggatctggagtccatgaaaaaggtcgtgctggacttctgtcaggaaaat
gagttgtcgctggaagtcgtcgccgccgcgctggcgttccgtctgcaggtggaacagcct
ttgttcccgattctgaaagacctgccgaagctggataaagacttccgtggtcgcgatcgt
gaccgtgatggccgtggtcgcaatcctcgtgatcgcgatcgtcgtggtcgtgaaggccgc
gaggggcgcgaaggtcgtgattcgcgtcgcgacgacggcataccgagagagcgttaccgc
atcgaagtgggccgctcccacgacgttagccctggtgatatcgtcggcgccatcgcgaac
gaagcgaacattgaaagcaagtacattggccacatcgccatttacgacaacttcagtact
gttgagctaccagaaggcatgccgaaagaagtgcttcagcacctgcagaaagtacgcatt
cgtcagcagctgatcaacatgaagccggacgccggtaagccagagcgtaagcctcgcagc
ggtcgtggcggtcctcgtcccgctaaacgtccacgctcttaa
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