Halomonas sp. H10-59: NFG57_18875
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Entry
NFG57_18875 CDS
T11900
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
hahq Halomonas sp. H10-59
Pathway
hahq03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
hahq00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
NFG57_18875 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
hahq03021
]
NFG57_18875 (rpoB)
03400 DNA repair and recombination proteins [BR:
hahq03400
]
NFG57_18875 (rpoB)
Enzymes [BR:
hahq01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
NFG57_18875 (rpoB)
Transcription machinery [BR:
hahq03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
NFG57_18875 (rpoB)
DNA repair and recombination proteins [BR:
hahq03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
NFG57_18875 (rpoB)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_1
RNA_pol_Rpb2_3
RNA_pol_Rpb2_7
RNA_pol_Rpb2_2
RNA_pol_Rpb2_45
7TMR-HDED
Motif
Other DBs
NCBI-ProteinID:
XBO74852
UniProt:
A0AAU7KSY7
LinkDB
All DBs
Position
complement(4329636..4333715)
Genome browser
AA seq
1359 aa
AA seq
DB search
MAYSYTEKKRIRKDFGKLPQVMDVPYLLAIQLDSYYDFLQQDRSPEERMEVGLHAAFRSV
FPIESFSGNAALEYVSYRFGTPAFDVKECQLRGVTYSAPLRVKVRLIIYDKESSNKAIKD
IKEQEVYMGEIPLMTENGTFVVNGTERVIVSQLHRSPGVFFDHDKGKSHSSGKLLYSARV
IPYRGSWLDFEFDPKDNVFVRIDRRRKLPASVLLRALGMSAEEILDEFFDTSTFHIEKSG
FSVELVPSRLRGETATFDIKGADGEVIVEEGRRVTQKHIRQLEKAGLERLEVPMDYLFGK
TLAKDQINPATGELICPCNSEITPELLEALGQAGITTIETLYTNDLDCGPFVSDTLKLDT
TGSQLEALVEIYRMMRPGEPPTKEAAETLFNNLFFSEDRYDLSGVGRMKFNRRLRRDSDT
GSGVLDRTDILDVLRELINIRNGFGDVDDIDHLGNRRIRCVGEMAENQFRVGLVRVERAV
KERLSMAESEGLMPQDLINAKPVAAAVKEFFGSSQLSQFMDQNNPLSEVTHKRRVSALGP
GGLTRERAGFEVRDVHATHYGRLCPIETPEGPNIGLINSLATYSHTNSYGFLETPYRKVV
DGVVTDEVVHLSAIEEGDFVIAQASATVNADKKLVDDLVQVRHRGETTFMRPEQVTLMDV
SPRQVVSVAAALIPFLEHDDANRALMGANMQRQAVPTLRADKPLVGTGMERFVARDSGVC
AVARRGGVIDSVDAKRIVVRVNEDEIIGGEAGVDIYNLTKYLRSNQNTCQNQRPIVRPGD
NVARGDILADGPSVDMGDLALGQNMRIAFMPWNGYNFEDSILLSERVVQEDRFTTIHIQE
LTCVSRDTKLGPEEITSDIPNVGESALGKLDEAGVVYIGAEVGAGDILVGKVTPKGETQL
TPEEKLLRAIFGEKASDVKDTSLRAPTGMKGTVIDVQVFTRDGVEKDSRALSIEQMQLDE
VRKDLQETYRIAEDATFERLKRTLSGQPVNGGPRLSKDDVLSEDYLEELPRQQWFKLRMQ
DEKLNELLAQADEQLENRRKEMDERFEDKKRKLTQGDDLAPGVLKIVKVYLAIKRRLQPG
DKMAGRHGNKGVISAIMPIEDMPFDDNGEPIDVVLNPLGVPSRMNVGQILETHLGMAARG
LGVKIEHMLRDAREQQLTQLREFLGEVYNSTQGTRVEEIESLSDDEIIALAKNLKKGVPM
ATPVFDGAKEHEIKHLLKLADLPDSGQMTLYDGRTGESFDRPVTVGYMYMLKLNHLVDDK
MHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVEGRT
KMYKSIVDGDHTMQAGMPESFNVLVKEIRSLGIDIELES
NT seq
4080 nt
NT seq
+upstream
nt +downstream
nt
atggcttactcatacactgagaaaaaacgcatccgcaaggatttcggcaaactgccccaa
gtgatggatgtgccttacctgctggccatccagcttgattcctactacgactttctccag
caggaccgctctcccgaagagcgtatggaagtcggcctgcacgccgccttcaggtccgtg
ttcccgatcgagagcttctccggcaacgctgcgctcgagtacgtcagctatcgtttcggc
actccggccttcgacgtcaaggaatgccagctgcgcggcgtcacctactccgctcctctg
cgtgtcaaggttcgcctgatcatctacgacaaggagtcgtcgaacaaggccatcaaggac
atcaaggagcaggaagtctacatgggggagatccccctgatgaccgagaacggtaccttc
gtggtgaacggtaccgagcgcgtcatcgtgtctcagcttcaccgtagtcccggcgtgttc
ttcgatcacgacaagggcaagagccacagctccggtaagcttctgtactccgctcgcgtg
attccttaccgcggctcctggctggacttcgagttcgacccgaaggacaacgtcttcgtg
cgtatcgaccgtcgtcgcaaactgccggcgtccgtgctgctgcgcgcgctgggcatgagc
gccgaggagatcctcgacgagttcttcgacaccagcaccttccatatcgagaagtctggc
ttctcggtggagctggtgccgtctcgcctgcgtggcgagaccgcgacctttgacatcaag
ggcgccgacggtgaggtcatcgtcgaagaggggcgtcgtgtcacccagaagcatatccgc
cagctggagaaggcgggtctcgagcgtctggaagtgccgatggactacctgttcggcaag
accctggccaaggaccagatcaaccctgccaccggcgagctgatctgcccctgcaactcc
gagatcaccccggagctgctcgaggccctcggtcaggccggcatcaccaccatcgagacg
ctctacaccaacgatctggactgcggtcccttcgtctccgacaccctcaagctggacacc
accggttcccagctcgaggcgctggtcgagatctaccgtatgatgcgccccggcgagccg
cccaccaaggaagccgccgagacgctgttcaacaacctgttcttcagcgaagaccgctat
gacctgtccggcgtcggccggatgaagttcaaccgtcgtctgcgtcgtgattccgacacc
ggttccggtgtgctggatcgtaccgacatcctcgacgtgctgcgcgagctgatcaacatc
cgtaacggctttggcgatgtcgacgacatcgaccacctgggcaaccgccgcatccgctgc
gtcggcgaaatggcagaaaaccagttccgtgtcggcctggtgcgtgtcgagcgcgcggtc
aaggagcgtctgtccatggccgagagcgaaggcctgatgcctcaggacctgatcaatgcc
aagccggtggccgctgcggtgaaggagttctttggctcctctcagctgtcccagttcatg
gaccagaacaacccgctgtccgaggtgacccacaagcgtcgtgtgtctgctctcggcccg
ggtggtctgacccgtgagcgcgccggtttcgaggtgcgtgacgttcacgctacccactac
ggccgtctgtgcccgatcgagacgccggaaggtccgaacatcggcctgatcaactcgctg
gcgacctacagccacaccaacagctacggcttcctcgagacgccgtaccgtaaggtcgtg
gatggcgtggtcaccgacgaggtggtgcacctgtcggccatcgaggaaggtgacttcgtc
atcgcccaggcctcggccaccgtcaacgccgacaagaagctggtcgacgacctggttcag
gtgcgtcatcgcggcgagaccaccttcatgcgtcccgaacaggtgacgctgatggacgtg
tctccgcgccaggtggtgtccgtcgccgccgcactgattccgttcctcgagcacgatgac
gccaaccgcgccctgatgggtgccaacatgcagcgtcaggcggtgccgaccctgcgtgcc
gacaagccgctggtcggtaccggcatggagcgcttcgtcgcccgtgactccggtgtctgt
gccgtggcccgtcgtggcggcgtgatcgactcggtcgacgccaagcgcatcgtggtgcgg
gtcaacgaagacgagatcatcggcggtgaggccggtgtcgacatctacaacctgaccaag
tacctgcgttcgaaccagaacacctgccagaaccagcgtccgatcgttcgccccggcgac
aacgtcgcgcgtggtgacatcctggccgacggtccgtccgtcgacatgggtgacctggcg
cttggccagaacatgcgcatcgccttcatgccgtggaacggttacaacttcgaggactcc
atcctgctgtccgagcgggtggtccaggaagaccgtttcactaccatccacatccaggaa
ctgacctgtgtgtcccgtgacaccaagctggggccggaggagatcacctccgatattccc
aacgtcggtgaatcggcactgggcaagctggatgaggccggtgtggtgtacatcggtgcc
gaggtcggcgccggcgacatcctggtcggcaaggtcacgcccaagggcgagacccagctg
accccggaagagaagctgctgcgtgcgatcttcggtgagaaggcgtccgacgtgaaggac
acctccctgcgtgcccccaccggcatgaagggcaccgtcatcgacgttcaggtgttcacc
cgcgacggcgtcgagaaggactcgcgcgctctgtccatcgagcagatgcagctcgacgag
gtgcgcaaggacctgcaggagacctaccgcatcgccgaggacgccaccttcgagcgtctc
aagcgcaccctgtccggtcagccggtcaacggtggtccgcgcctgtccaaggatgatgtg
ctgtccgaggactatctcgaggagctgccgcgtcagcagtggttcaagctgcgcatgcag
gacgagaagctcaatgaactgctggctcaggccgacgagcagctcgagaaccgtcgcaag
gaaatggacgagcgtttcgaagacaagaagcgcaagctcacccagggcgacgatctggcg
ccgggcgtgctcaagatcgtcaaggtctacctggcgatcaagcgtcgcctgcagccgggt
gacaagatggccggccgtcacggtaacaagggtgtcatctcggccatcatgccgattgag
gacatgccgttcgacgacaacggtgagcccatcgacgtggtgctgaacccgctgggtgta
ccgtcgcggatgaacgtcggtcagatcctcgagacgcacctgggcatggcggcccgcggt
ctcggcgtgaagatcgagcacatgctgcgtgacgcccgcgagcagcagctcactcagctg
cgagagttcctcggtgaggtctacaactccacccagggtacccgcgtcgaggagatcgag
tcgctgtccgatgacgagatcatcgcgctggccaagaacctgaagaagggcgtgccgatg
gcgacgccggtgttcgacggtgccaaggagcacgagatcaagcacctgctgaagctggcc
gatctgccggattccggccagatgaccctgtacgacgggcgtaccggcgagtcgttcgat
cgtccggtgacggtgggctacatgtacatgctgaagctcaaccacctggtcgacgacaag
atgcacgcgcgttccaccggctcctactcgctggtcacccagcagccgctgggcggcaag
gcgcagttcggtggtcagcgctttggtgagatggaggtctgggccctggaggcctacggc
gccgcttacactctgcaggaaatgctcacggtcaagtccgatgacgtggaaggtcgtacc
aagatgtacaagagcatcgtggatggcgatcacaccatgcaggcgggcatgccggaatcc
ttcaacgtattggtgaaggaaatccgctcgctgggcatcgatatcgaactggagagctga
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