Halanaeroarchaeum sp. HSR-CO: HSRCO_0134
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Entry
HSRCO_0134 CDS
T09490
Symbol
recJ
Name
(GenBank) Single-stranded DNA-specific exonuclease RecJ
KO
K07462
single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
hahs
Halanaeroarchaeum sp. HSR-CO
Pathway
hahs03410
Base excision repair
hahs03430
Mismatch repair
hahs03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
hahs00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
HSRCO_0134 (recJ)
03430 Mismatch repair
HSRCO_0134 (recJ)
03440 Homologous recombination
HSRCO_0134 (recJ)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
hahs03400
]
HSRCO_0134 (recJ)
DNA repair and recombination proteins [BR:
hahs03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
RecJ
HSRCO_0134 (recJ)
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
HSRCO_0134 (recJ)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
HSRCO_0134 (recJ)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DHH_CID
DHHA1
DHH
Motif
Other DBs
NCBI-ProteinID:
UWG46436
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All DBs
Position
complement(129759..131195)
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AA seq
478 aa
AA seq
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MDAPVPALATRAEAAARRLREAEAVLLASHIDADGLTSAAIATTALERADIPVATTFEKQ
LDEEAIAAIAASDYETVLFTDFGSGQLDVVVEYADRAGFTPIVADHHQPADADAEFHVNP
LLEGIDGGSELSGAGAAYVLARALADCGRDPEDHATDGNRDLAALAVVGAVGDMQTVDGE
LVGANARIVEEGVAAGVLDTAKDLAMYGTQTRPLPKLLEYANDVRIPGITNDQAGAVRFL
DGLDLDLKADGDWRTWADLTHDERQTVVSALVRRAVRNGVPASRIDDLIGTSYTLPRETA
GTVLRDASEFSTLLNATARYDRADVGLAVCLGERGAAFGEAERLLRTHRRNLSQGIEWVA
DHGVTREDNCQWFHAEDEIRETIVGIIAGMAFGADGVDRSVPMIAFAHAEDGETKVSARG
NARLLRKGLDLSAVMQQASRAVGGDGGGHAVAAGATVPRGKETAFVEAADRILGEQLR
NT seq
1437 nt
NT seq
+upstream
nt +downstream
nt
atggacgcaccggttcccgctctggccacccgcgccgaggccgctgcccgacggctccgc
gaagcggaggcggtactgctggcctcccacatcgacgccgacgggctcaccagtgccgcc
atcgccaccacggcgctcgaacgagccgacatcccggtggcgacgaccttcgagaagcaa
ctcgacgaggaggccatcgcggccatcgccgcgagcgactacgaaaccgtcctgttcacc
gacttcgggagtggccaactcgacgtcgtcgtggagtacgccgatcgggccggcttcacc
ccgatcgtggccgaccaccaccagccggccgacgccgacgccgagttccacgtcaacccg
ctactggagggcatcgacggcggcagcgaactgtccggcgcgggggcggcgtacgtgctc
gcgcgggcgctcgcggactgcggccgcgacccagaggaccacgcgaccgacgggaaccgc
gacctcgccgcgcttgccgtcgtcggcgccgtcggcgacatgcagacggtcgacggcgaa
ctcgtcggcgcgaacgcccggatcgtcgaggagggggtcgctgccggcgtactggatacc
gcgaaggacctggcgatgtacggcacccagacccgcccactcccgaagctcctcgagtac
gcgaacgacgtacggatcccgggcatcacgaacgaccaggccggtgccgttcgattcctg
gacggcctcgatctggacctcaaagctgacggcgactggcggacgtgggccgatctgacc
cacgacgaacgccagacagtggtctccgcgctggtcagacgggcggtgcgaaacggcgtt
ccagcgtcgcggatcgacgatctgatcggtaccagttacaccctgccccgggagacggct
gggaccgtgctacgggacgcctccgagttctccaccctgctcaacgcgaccgctcgctac
gaccgggccgacgtcggcctggccgtctgcctcggggagcgtggagcggccttcggcgaa
gcggagcgcctgttacgcacccaccgccgaaacctctcacagggtatcgagtgggtggcc
gatcacggcgtcacgcgggaagacaactgccagtggttccacgccgaagacgagatcaga
gagaccatcgtcggcattatcgccggcatggccttcggcgcggacggggtggaccggtcg
gttccgatgatcgccttcgcccacgctgaggacggggagacgaaggtttccgcgcggggg
aatgcgaggctactccggaaggggctcgacctctcggcggtcatgcagcaggcatcccgg
gcggtcggcggcgacggcggggggcatgccgtcgcggccggcgcgaccgttccccgaggg
aaggagacggcgttcgtcgaggccgccgaccgcatcctcggtgaacagctacgctga
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