KEGG   Halanaeroarchaeum sp. HSR-CO: HSRCO_1904
Entry
HSRCO_1904        CDS       T09490                                 
Symbol
cdc9
Name
(GenBank) ATP-dependent DNA ligase
  KO
K10747  DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7]
Organism
hahs  Halanaeroarchaeum sp. HSR-CO
Pathway
hahs03030  DNA replication
hahs03410  Base excision repair
hahs03420  Nucleotide excision repair
hahs03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:hahs00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    HSRCO_1904 (cdc9)
   03410 Base excision repair
    HSRCO_1904 (cdc9)
   03420 Nucleotide excision repair
    HSRCO_1904 (cdc9)
   03430 Mismatch repair
    HSRCO_1904 (cdc9)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:hahs03032]
    HSRCO_1904 (cdc9)
   03400 DNA repair and recombination proteins [BR:hahs03400]
    HSRCO_1904 (cdc9)
Enzymes [BR:hahs01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     HSRCO_1904 (cdc9)
    6.5.1.6  DNA ligase (ATP or NAD+)
     HSRCO_1904 (cdc9)
    6.5.1.7  DNA ligase (ATP, ADP or GTP)
     HSRCO_1904 (cdc9)
DNA replication proteins [BR:hahs03032]
 Eukaryotic type
  DNA Replication Elongation Factors
   Other elongation factors
    HSRCO_1904 (cdc9)
 Prokaryotic type
   Elongation factors (archaeal)
    Other elongation factors
     HSRCO_1904 (cdc9)
DNA repair and recombination proteins [BR:hahs03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    Long Patch-BER factors
     HSRCO_1904 (cdc9)
   NER (nucleotide excision repair)
    Other NER factors
     HSRCO_1904 (cdc9)
   MMR (mismatch excision repair)
    Other MMR factors
     HSRCO_1904 (cdc9)
SSDB
Motif
Pfam: DNA_ligase_A_M DNA_ligase_A_N DNA_ligase_A_C RNA_ligase Vts1
Other DBs
NCBI-ProteinID: UWG48182
LinkDB
Position
1837425..1839071
AA seq 548 aa
MEFSEFADQASDVEAATADGDIVDLVADLFAAAGDDLPIVARYVQGRVFPGHDETKLDVG
PSNCYEAIARAAGQNVDADDVESTVADLGDVGRVAASYDFGSQQGLAAFGGGSDDGLTVA
AVHDELETLAAASGTGSTDEKVTILFGLFNRCNPDEARYLARLVLSEMRIGVGAGTVRDA
IDEAFDVPADAVGRALQVSNDYGLVAETARDDPAGLGDITLEMGRPVQAMLAQAGTANDA
LEEWGETACETKYDGARVQIHIDDDVEIYSRNMEDVTDPLPDVVAAVEGSIDVPAILDGE
VLAVDDAGDPLPFQAVLRRFRRKHDVERARDEIELQLVVFDCLYADGRELVDASLLDRRE
RLEEIWDGTLAEFSLADDAEAIADLEAEALAAGHEGIMLKNPESAYTPGRRGKNWLKRKP
DVETLDLVVTGAEWGEGRRASFLGTYELSVSTPDGFETVGKVATGITDEELARLSDLVES
KILTEDGQTVDVEPSVVFEVGYEEIQESPTYSSGYALRFPRFVSVREDKSPEDADSLERV
ERLVQKQG
NT seq 1647 nt   +upstreamnt  +downstreamnt
atggagttcagcgagttcgccgaccaggcgagcgacgtcgaggccgccaccgcggacggc
gacatcgtcgacctggtagccgacctgttcgccgcggccggcgacgacctccccatcgtc
gctcgatacgtccagggacgggtcttccccggccacgacgagacgaaactcgacgtcggc
ccgagcaactgctacgaggccatcgcccgggcggccggccagaacgtcgacgccgacgac
gtggagtcgacggtcgccgacctcggagacgtcggtcgcgtggccgccagctacgatttc
gggagtcaacagggcctggcggcgttcggtggcgggtccgacgacggcctgaccgtcgcg
gcggtccacgacgaactcgagaccctcgccgccgccagcgggacaggaagcaccgacgag
aaggtcaccatcctcttcgggttgttcaaccgatgtaacccggacgaagcccgatatctg
gcccgactcgtcctctcggagatgcgtatcggcgtcggcgccggcacggtccgggacgcc
atcgacgaggcattcgacgtcccagccgacgcggtcgggcgcgccctccaggtgtcgaac
gactacggcctcgtcgccgagacggcccgcgatgatcccgcgggcctcggggacatcacc
ctcgagatggggcgaccggtccaggccatgctggcccaggccgggaccgccaacgacgca
ctggaggagtggggcgagacggcctgtgagacgaagtacgacggtgcccgcgtccagatc
cacatcgacgatgacgtcgagatctactcgcggaacatggaggacgtgaccgacccgctg
cccgacgttgtcgcggcggtcgagggatcgatcgacgtccccgcgatcctcgacggggag
gtcctcgccgtcgacgatgcgggcgacccactccccttccaggcggtcttgcgccggttt
cgccggaaacacgacgtcgagcgtgcgagagacgagatcgaactccagctggtcgtcttc
gactgcctgtacgcggatggtcgggaactcgtcgacgcgtcgctgctcgacagacgcgag
cgactcgaggaaatctgggacggcacgctcgccgaattctcgctcgcagacgacgccgag
gccatcgccgacctcgaagcggaggcgctcgcggcgggtcacgaggggatcatgttgaag
aacccggaatccgcctacacccccggacggcgggggaagaactggctgaaacggaaaccg
gacgtggagaccctcgacctggtcgtcaccggtgcggagtggggcgagggacgccgggcg
agtttcctcggcacttacgaactctcggtcagcacccccgacggcttcgagacggtcggt
aaggtggccacgggcatcaccgacgaggagttggcacggctctccgacctcgtcgagtcg
aagatcctcaccgaggacgggcagacggtggacgtcgaaccgtcggtggtcttcgaggtt
ggctacgaggagatccaggagtcgcccacctactcgtctgggtacgcactccgattccca
cggttcgtctccgttcgagaggacaagtcaccggaggacgccgattcgctagaacgggtc
gaacggttggtgcagaagcagggttaa

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