Halanaeroarchaeum sp. HSR-CO: HSRCO_1994
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Entry
HSRCO_1994 CDS
T09490
Symbol
rnjA
Name
(GenBank) mRNA degradation ribonuclease J1/J2
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
hahs
Halanaeroarchaeum sp. HSR-CO
Pathway
hahs03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
hahs00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
HSRCO_1994 (rnjA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hahs03019
]
HSRCO_1994 (rnjA)
Messenger RNA biogenesis [BR:
hahs03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
HSRCO_1994 (rnjA)
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GFIT
Motif
Pfam:
RNase_J_b_CASP
Lactamase_B_2
Lactamase_B
RMMBL
Anti-Pycsar_Apyc1
Motif
Other DBs
NCBI-ProteinID:
UWG48269
LinkDB
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Position
1925785..1927131
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AA seq
448 aa
AA seq
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MEIEIATIGGYEEVGRQMTAVRAGSDVVIFDMGLNLSKVLIHDNVETERMHSLDLIDMGA
IPDDRVMSELEGDVQAIVPTHGHLDHIGALSKLAHRYDAPIVASPYTIELVKGQIEGEQK
FGVDNDLVKMSGGESMEIGEGLELEFVHVTHSIIDAINPVLHTPEGAIVYGLDKRIDHDP
VLEDPIDMKRFREIGREGEGVLCYIEDTTNASKKGRTPSESMARFHLRDTMKSIEDYSGG
IVATTFSSHISRVSSLVEFAKEIGRQPILLGRSMEHYSGAAERMGYVDFPDNLGMFGHRK
SVDRAFKRIMNEGKGNFLPIVTGHQGEPRAMLTRMGRGETPFELENGDKVIFSARVIPEP
TNEGQRYQAEKLLSMQGARIYDEIHVSGHLSQEGHYQMLDALQPQHVIPAHQDLKGMAPY
VDLAESEGYEMGRDLHVTRNGNRIQLVE
NT seq
1347 nt
NT seq
+upstream
nt +downstream
nt
atggaaatcgaaatcgcaacgataggcggatacgaagaggtcggacggcagatgactgcc
gttcgagcaggaagcgacgtcgtcatcttcgacatggggctcaacctgtcgaaggtgctg
atccacgacaacgtggagaccgagcggatgcacagcctcgacctgatcgacatgggcgcc
atcccggacgaccgcgtgatgtccgaactggagggtgacgtgcaggccatcgtgccgacg
cacggccacctcgaccacatcggtgccctctcgaagctcgcccatcggtacgacgcaccg
atcgtcgcgtcgccgtacaccatcgaactggtgaaagggcagatcgagggcgaacagaag
ttcggcgtcgacaacgatctggtcaagatgtcgggcggcgaatcgatggagatcggcgag
ggcctcgaactcgagttcgtccacgtcacccactccatcatcgacgccatcaatccggtc
ctccacacgccagagggcgcaatcgtctacggcctcgacaaacgcatcgaccacgatccg
gtcctcgaggacccgatcgacatgaagcggttccgcgagatcggtcgcgagggcgagggc
gtgctctgttacatcgaggacaccacgaacgcctcgaagaaggggcgcacgccgagcgag
tcgatggcccggttccacctccgcgatacgatgaagagtatcgaggattactcgggcggc
atcgtcgcgaccacgttctccagtcacatctcccgcgtgagcagtctcgtcgagttcgcc
aaggagatcggtcgccagcccatcctcctgggccggtcgatggagcactactccggggcc
gccgagcgcatgggctacgtggacttccccgacaacctcgggatgttcggtcaccgcaag
agcgtcgaccgtgcgttcaagcgcatcatgaacgagggcaaggggaacttcctgcccatc
gtcaccggccaccagggggaaccgcgcgcgatgctcacccggatgggccgcggcgagacg
cccttcgaactggagaacggtgacaaggtcatcttctcggcccgcgtcatccccgaaccg
acgaacgagggacagcgctatcaggccgagaagctcctctcgatgcaaggtgcgcgcatc
tacgacgagatccacgtctccgggcacctgagccaggagggccactaccagatgctggac
gctctccagccccagcacgtcatcccggcccatcaggacctcaagggaatggccccgtac
gtcgacctcgccgagagcgagggctacgagatggggcgtgacctgcacgtcacgcggaac
ggcaaccgcatccagctcgtggagtga
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