Halanaeroarchaeum sp. HSR-CO: HSRCO_2340
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Entry
HSRCO_2340 CDS
T09490
Symbol
cdc48-3
Name
(GenBank) ATPase of the AAA+ class, CDC48 family
KO
K13525
transitional endoplasmic reticulum ATPase
Organism
hahs
Halanaeroarchaeum sp. HSR-CO
Pathway
hahs04141
Protein processing in endoplasmic reticulum
Brite
KEGG Orthology (KO) [BR:
hahs00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04141 Protein processing in endoplasmic reticulum
HSRCO_2340 (cdc48-3)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hahs03019
]
HSRCO_2340 (cdc48-3)
03009 Ribosome biogenesis [BR:
hahs03009
]
HSRCO_2340 (cdc48-3)
04131 Membrane trafficking [BR:
hahs04131
]
HSRCO_2340 (cdc48-3)
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
hahs04147
]
HSRCO_2340 (cdc48-3)
Messenger RNA biogenesis [BR:
hahs03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Ran-mediated transport factors
HSRCO_2340 (cdc48-3)
Ribosome biogenesis [BR:
hahs03009
]
Eukaryotic type
Pre-60S particles
Ribosome quality control proteins
HSRCO_2340 (cdc48-3)
Membrane trafficking [BR:
hahs04131
]
SNARE
SNARE associated proteins
Others
HSRCO_2340 (cdc48-3)
Autophagy
Aggrephagy
Other aggrephagy associated proteins
HSRCO_2340 (cdc48-3)
Exosome [BR:
hahs04147
]
Exosomal proteins
Exosomal proteins of haemopoietic cells (B-cell, T-cell, DC-cell, reticulocyte, and mast cell)
HSRCO_2340 (cdc48-3)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA
AAA_lid_3
CDC48_N
CDC48_2
AAA_16
RuvB_N
AAA_5
TIP49
AAA_22
AAA_2
AAA_33
AAA_14
nSTAND3
NPHP3_N
RNA_helicase
IstB_IS21
AAA_28
AAA_7
Mg_chelatase
AAA_18
ABC_tran
AAA_25
ATPase
AAA_17
DUF815
AAA_3
Sigma54_activat
Parvo_NS1
AAA_lid_PRS2_C
NB-ARC
AAA_24
AAA_30
TsaE
AAA_11
PhoH
Vps4_C
SLFN-g3_helicase
KAP_NTPase
NACHT
IPT
Motif
Other DBs
NCBI-ProteinID:
UWG48606
LinkDB
All DBs
Position
2226430..2228658
Genome browser
AA seq
742 aa
AA seq
DB search
MNEVQLEVAKAYPNDSGRGIARLDPDTLLHLKLSPGDIIEIEGAEMTAAKVWRADRQDWN
TDTVRIDGFTRQNADVGIGERVKIRKAEAEKAETLVLAPPEEASVQFGSDAAGMVKRQIL
KRPVVARDIVPVMSSTNHPFMRSPGQAIPLIAVETEPEGVVLVTEDTEVELREEPISGFE
RTGGGITYEDIGGLQNEIQRVREMVELPMKHPQIFQKLGIEPPQGVLLHGPPGTGKTLLA
KAVANETSASFFSIAGPEIISKYYGESEQQLREIFEDAKDEAPAIIFIDELDSIAPKRED
VTGEVERRVVAQLLTMMDGLEGRGQVIVIAATNRVDAVDPALRRPGRFDREIEIGVPDEV
GREEILKIHTRGMPLSDDINLSKLADDTHGFVGADIESLTKEAAMRALRRYLPEIDLDEE
DIPPSLIDRMIVKRNDFQGALNEVEPSAMREVLVELPKVSWDDVGGLADAKSKVKESVEW
PLTSREKFTRLGINPPSGVLLYGPPGTGKTLMAKAVANETNANFISVRGPQLLSKWVGES
EKAIRQTFRKARQVSPTVVFFDELDSLAPGRGQDTGNNVSERVVNQLLTELDGLEDMEDV
VVIGATNRPDIIDPALIRSGRFDRLVMIGQPGVEGREEILRIHTQDTPLAPDVSLRELAE
RTDGYVGSDLANIAREAAIEALRDDDEADAVEMRHFRAALDSVRPTITEDLLEYYERVEE
DLTGGSTPAAGDRRREGHIGFQ
NT seq
2229 nt
NT seq
+upstream
nt +downstream
nt
atgaacgaagtccaactggaagtggcgaaggcgtacccgaacgactcgggtcgcggaatc
gcccgcctcgaccccgacacgctgttgcacctcaaactgagccccggcgatatcatcgaa
atcgagggcgcggagatgaccgcggcgaaggtatggcgtgcggatagacaggactggaac
accgatacagtccgtatcgacggcttcacccggcagaacgccgacgtcggcatcggcgaa
cgggtgaagatacggaaagctgaagccgagaaggccgagacgctggtgctcgccccgccg
gaggaggcgagcgtgcagttcggctccgatgcggccggcatggtgaaacgccagatcctc
aagcgaccggtcgtcgctcgcgacatcgtcccggtgatgtcgagtacgaaccacccgttc
atgcggtcaccgggccaggcgataccgctcatcgccgtcgagacggagccggaaggagtc
gtcctcgtgaccgaagacacggaagtcgagttgcgagaagaaccgatctcggggttcgag
cgcaccggcggtggcatcacctacgaggatatcggcggcctgcaaaacgagatccagcgg
gtccgggagatggtcgaactcccgatgaagcacccgcagatcttccagaaactcggcatc
gagccgccacagggagtcctcctgcacggcccgccggggaccggcaagaccctcctcgcg
aaggcggtggccaacgagacgtcggcgagtttcttctccatcgccggccccgaaatcatc
tcgaagtactacggcgagtccgaacagcaactccgggagatattcgaggacgccaaagac
gaggcgccggcgatcatcttcatcgacgaactggactccatcgcgccgaagcgcgaggac
gtgaccggcgaggtcgaacggcgggtcgtcgcccagttgctcacgatgatggacggtctc
gagggacgaggccaggtcatcgtcatcgccgcgaccaaccgcgtggacgccgtggatccg
gcgctgcgccggcccggacgattcgaccgcgagatcgagatcggcgtccccgacgaggtg
ggtcgcgaggagatactcaagatccacacgcgcgggatgcccctcagcgacgacatcaac
ctctcgaaactggcggacgacacccacggcttcgtcggggcggacatcgagtcgctcacg
aaggaggccgcgatgcgcgcgctccgccgctacctcccggagatcgacctcgacgaggag
gacatcccgccgagtctcatcgaccggatgatcgtcaaacgcaacgacttccagggcgcg
ctcaacgaggtcgaacccagcgccatgcgcgaggtcctcgtcgaactcccaaaggtctcc
tgggacgacgtcggggggctggcggatgcgaagtcgaaggtcaaagagagcgtcgagtgg
ccgctgacgtcccgggagaagttcacccgcctggggatcaacccgccgtccggggtcctc
ctctatggcccgccggggaccggcaagacgctgatggcgaaggccgtggccaacgagacg
aacgcgaacttcatcagcgtgcgcggcccacaactcctctcgaagtgggtcggcgagtcc
gagaaggcgatccgacagaccttcaggaaggcccggcaggtcagcccgacggtcgtgttc
ttcgacgaactcgacagtctggcgccaggccgcggccaggacacgggcaacaacgtctcc
gaacgggtcgtcaaccagttactgaccgaactggacgggctcgaagacatggaggacgtc
gtcgtcatcggcgcgacgaaccgcccggacatcatcgatccggccctgatccgctcgggc
cgcttcgatcgcctggtgatgatcggccaaccaggtgtcgaaggtcgcgaggagatcctg
cggatccacacccaggacacgccgctcgcccccgacgtctcgctgcgcgaactggcagag
cggaccgacggctacgtcggctcggacctcgcgaacatcgcccgcgaagcggccatcgag
gcccttcgcgacgacgacgaggcggacgcggtcgagatgcgacacttccgtgccgccctc
gattcggtccgcccgacgatcaccgaggacctcctcgagtactacgagcgggtcgaagaa
gatctgaccggcgggtccacgcctgctgccggtgaccgccgccgcgaaggccacatcggg
ttccagtag
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integrated database retrieval system
