Halanaeroarchaeum sp. HSR-CO: HSRCO_2684
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Entry
HSRCO_2684 CDS
T09490
Symbol
sen2
Name
(GenBank) tRNA splicing endonuclease
KO
K01170
tRNA-intron endonuclease, archaea type [EC:
4.6.1.16
]
Organism
hahs
Halanaeroarchaeum sp. HSR-CO
Brite
KEGG Orthology (KO) [BR:
hahs00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
hahs03016
]
HSRCO_2684 (sen2)
Enzymes [BR:
hahs01000
]
4. Lyases
4.6 Phosphorus-oxygen lyases
4.6.1 Phosphorus-oxygen lyases (only sub-subclass identified to date)
4.6.1.16 tRNA-intron lyase
HSRCO_2684 (sen2)
Transfer RNA biogenesis [BR:
hahs03016
]
Prokaryotic type
tRNA spricing factors
tRNA splicing endonucleases
HSRCO_2684 (sen2)
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Gene cluster
GFIT
Motif
Pfam:
tRNA_int_endo_N
tRNA_int_endo
SEN2-like_N
Motif
Other DBs
NCBI-ProteinID:
UWG48940
LinkDB
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Position
complement(2550453..2551487)
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AA seq
344 aa
AA seq
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MDAELHDDEVRVGGDARQRFHDARGYGRPLEGNRIALDPLEAAHLLYRGDIAAVDGMDFR
AFLASRPAGFAPRFLVYLDLRDRGFYLSPAREGWVADSEDVDLVVYPRGKGPGDGAVAHR
VRVVGERTDVAADSLGDQVLAVVDEEGDLTYLDVSPLEPEGGTEVDLGGPVDGALLDDRV
VVWDPPEPLHERAFYGKPLEGRAAAYEALHLSLVEGAYLAARGLLELPEGRGVEALVEHG
RRVEGERFDRRLRAYSALRDRGAVPKTGFKFGADFRVYREVTSAEDLGHSELLVRVVPND
VAFDPRDLALDVRLAHGVRKRMVFALDAANEDTIQWRAVSRLTP
NT seq
1035 nt
NT seq
+upstream
nt +downstream
nt
atggacgccgagctgcacgacgacgaggtccgggtcggcggtgacgcgcgacagcggttc
cacgacgcgcgcggctacggccgtccgctcgaggggaaccgcatcgcgctcgacccgctg
gaggccgctcacctgctctatcggggcgacatcgcggccgtcgacgggatggacttccgg
gcgttcctcgcgtcccgaccggccggtttcgccccccggtttctggtctacctcgacctg
cgagacaggggattctatctctcgcccgcgcgcgagggctgggtcgcggatagcgaggac
gtcgacctggtcgtgtacccgcgaggcaaggggccgggcgacggggcggtggcccaccgc
gtccgggtcgtcggcgagcggaccgacgtcgccgccgactcgctcggcgaccaggtcctg
gcggtcgtcgacgaggagggcgacctcacctacctggacgtctcgcccctcgagcccgag
ggcgggaccgaggtggacctgggcggaccggtcgacggcgccctcctcgacgaccgggtg
gtcgtctgggacccgccggaacccctccacgagcgggcgttctacggcaagcccctggag
ggacgggccgccgcctacgaggccctccatctctcgctggtcgagggtgcgtacctggcc
gcccgggggttgctcgaactccccgagggccgcggcgtggaagcgctggtcgaacacggg
agacgggtcgagggcgagcgcttcgaccggcggctgagggcgtactccgcgcttcgcgac
cggggtgcggtgccgaagaccgggttcaagttcggcgccgactttcgcgtctatcgtgag
gtaacgtcggccgaggacctcggccactccgaactcctggtccgtgtcgtcccgaacgac
gtcgccttcgatccgcgcgacctcgcgctcgacgttcggctcgcccacggggtgcggaag
cgaatggtttttgcgctcgacgcggcgaacgaggatacgatacagtggcgggccgtctcc
cggctcacgccctga
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