Helicobacter ailurogastricus: ASB7_10590
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Entry
ASB7_10590 CDS
T08780
Symbol
mfd
Name
(GenBank) transcription-repair-coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
hail
Helicobacter ailurogastricus
Pathway
hail03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
hail00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
ASB7_10590 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
hail03400
]
ASB7_10590 (mfd)
Enzymes [BR:
hail01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
ASB7_10590 (mfd)
DNA repair and recombination proteins [BR:
hail03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
ASB7_10590 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
TRCF
Helicase_C
CarD_TRCF_RID
UvrB_inter
ResIII
Motif
Other DBs
NCBI-ProteinID:
BDQ29222
LinkDB
All DBs
Position
982570..985545
Genome browser
AA seq
991 aa
AA seq
DB search
MIQASLYSALGGFKSTILATKDSQEALEALQVWRFFSPHTPVFVLPELRAHYLDDMRAFS
TELKELLSTLGRFYTSLKGDPNTKLLAPLSALLNPLPSPQLLQSFSIACLESYSLADLQE
KLRLYGYDFVDLIELPGEASFRGDIVDIFIPGQSKPHRLSFLGQDCEDIRTFDPHTQLSD
PSLIEQIEIIPALFSLDKATHDILQGRIEKLNASVFLPDLASLGFWVLEDLGRDFLKHYG
VVLSAGAHEQAQEWLSLEPSPSLKQALSLATLPTPAHCQDVQKPANLQDFLELNAAKKTT
LIAKNADFLPLLNAPFTSAISDCVLHFSTPTQLFLSLHSYDPPKSHQSSKLMLNELSCGD
FVVHENYGIGLFKGLVQQSVLGSVRDFIAIEYQNTDRLLLPVENLHLIERYIANQDMPLL
DKLGKGSFAKIKDKVRAKILEMSAQIIALAAKRSLLKSPLMPLDAQKMQAFKEACGFALT
SDQEQSIAAILQDFTSDQVMDRLLNGDVGFGKTEVAMHAIYAIFLSGKQSALFVPTTLLC
TQHFATLKRRLEPFGLKVARLDRFSKDKKAILEGLQKGLISVVVGTHALLEASFKELGLV
VVDEEHKFGVKQKEAIKALSTQVHCLSMSATPIPRTLSMALSKLKGVSTLSTPPSIRRPS
RTFVKEKTDALLKEVILRELRRRGQVFYIHNHIESIPRVQAALLTLLPHLRVQILHSKVP
ALQAEQALLDFARGDYDVLLCTSIVESGLHLPNANTIIIDNADNFGLADLHQLRGRVGRG
HKEGFCYFLVPDTKSLSVEAKKRLCALEKNAYLGSGASIAMHDLQIRGGGNFLGADQSGH
IKSIGYGLYTKMLEEAICGRTQEVGVDLNLSVSAFLSPKLIASDSLRLELYRRLSFCQDL
ASVQEIQAEMKDRFGTLDAMSTQFLQIIRVKILANRLNISKISQYGQNITLFMQGDQNVL
LKAPSKDDENILQTLLSHLQQQAGLATTPQP
NT seq
2976 nt
NT seq
+upstream
nt +downstream
nt
atgatccaagccagcctttatagtgctttgggcggctttaaatccacaattttagccacc
aaagacagccaagaagccctagaagctttgcaagtgtggcgcttttttagcccacacacc
cccgtctttgtcttgccggagctacgtgcccactacctagacgacatgcgcgcctttagc
accgagcttaaagagctgttaagcactttggggcgtttttacacttctttaaagggcgat
cccaacaccaagcttttagcgcccctaagcgcgcttttaaatcccctgcctagcccccaa
ctcttgcaaagctttagcatcgcttgtttagaaagttactctctagcagacttgcaagag
aaattaaggctttatggctatgattttgtagatctcatcgagctgcccggggaggccagc
tttcgaggcgacattgtggatatttttatcccagggcagagcaagcctcaccgcctcagc
tttttaggccaagattgcgaggacatccgcacctttgacccacacacgcaacttagcgac
ccctctttaatcgagcaaatagagatcatccctgccctctttagcttagataaagccaca
cacgacattttgcaagggcgcatagagaaattaaacgcctccgtttttctgcccgatttg
gcctctttgggcttttgggtgttggaggatttggggcgcgattttttaaaacactacggc
gtggttttaagcgcaggggcacacgagcaggctcaagagtggttaagtttagagcctagc
cctagcttaaagcaggccttaagcctagccactttacccacacctgcccactgccaagat
gtccaaaaaccggcaaatttgcaagacttcttagagctaaacgctgccaaaaaaaccacg
ctcattgccaaaaatgcggattttttgccccttttaaatgccccctttacaagcgccatt
tctgattgcgtgttgcactttagcacccccacacagctttttttatctctacacagctac
gaccctcccaagagccatcagagctctaaactcatgctaaacgagctctcttgcggggat
tttgtggtgcatgagaactatggcatcgggctttttaaagggctagtgcaacaaagcgtg
ctaggcagcgtgcgcgattttatcgccatagaataccaaaacacggatcgcctcctcttg
cctgtggagaatctacacttgattgagcgctacatcgccaaccaagacatgcccctttta
gacaagctaggcaagggcagctttgctaaaatcaaggacaaggtgcgggcaaagatttta
gaaatgtcggcgcaaatcatcgccctagccgctaaacgcagtttgctaaaaagccctctt
atgcccctcgatgcgcaaaaaatgcaagcctttaaggaagcctgtgggtttgctctcaca
agcgatcaagagcaaagcattgctgccattttacaagattttaccagcgatcaggtgatg
gatcggctcttaaacggggatgtgggctttggcaaaacagaagtggcgatgcacgccatt
tatgcgatttttttaagcggcaagcaaagcgcgctctttgtgcccaccacgctgttatgc
acccaacactttgccaccttaaagcggcgtttagagccctttgggcttaaagtggccaga
ctcgatcgctttagcaaggacaaaaaggccattttagaggggttgcaaaagggtttaatc
agcgtggtcgtggggacacacgccttgttggaagccagttttaaagagcttgggctagtt
gtggtcgatgaagaacataaattcggagtcaagcaaaaggaagccattaaggccttgagc
acgcaggtacattgtttgagcatgtcggccacacccattcctagaacccttagcatggcc
ttgtctaaactcaaaggggtgagcaccctaagcaccccacctagcatcagacggcccagc
cgcacctttgttaaagaaaagacagacgcgcttttaaaagaggtgattttaagggaattg
cgccgtagggggcaggtgttttacatccacaaccacattgagagcatcccaagagtgcaa
gccgcccttttaactctcttgcctcacttgagggtgcaaattttacactctaaagtcccc
gccctacaagccgaacaagctttgctagattttgctaggggggattatgatgtgctttta
tgcacttcgatcgtggagtcggggctgcacctacccaatgccaacaccatcatcatcgac
aacgccgacaacttcgggttggccgatttgcaccaactaagggggcgggtggggcgcgga
cacaaagagggcttttgctattttcttgtgccagacacaaagagcttaagcgttgaggct
aaaaaaagattgtgcgccttagaaaagaacgcgtatttgggtagcggggcgagcattgcg
atgcacgatctgcaaattagaggcgggggcaatttcttaggagccgatcagagcggacac
attaaaagcatcggctatgggctttacaccaaaatgctagaagaagccatttgcgggcgt
acgcaagaggtgggcgtggatttaaatctaagcgtgagtgcctttttaagccctaagctc
attgccagcgacagcctacgcttggagctttataggaggcttagtttttgccaagattta
gccagcgtgcaagagatccaagccgaaatgaaagatcgctttggcacgctagatgccatg
agcacgcaatttttacaaatcattcgggtaaaaatcctagccaaccgcttaaatatcagc
aaaatctcgcaatacgggcagaacatcacgctgtttatgcaaggcgatcaaaatgttttg
ttaaaagcccccagtaaggacgatgaaaacattttacagactttacttagccacttgcaa
caacaggctgggctagccacgactccacagccttaa
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