Haloplanus rubicundus CBA1113: DU500_00850
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Entry
DU500_00850 CDS
T05613
Name
(GenBank) ATP-dependent helicase
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
haj
Haloplanus rubicundus CBA1113
Pathway
haj03420
Nucleotide excision repair
haj03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
haj00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
DU500_00850
03430 Mismatch repair
DU500_00850
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
haj03400
]
DU500_00850
Enzymes [BR:
haj01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
DU500_00850
DNA repair and recombination proteins [BR:
haj03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
DU500_00850
MMR (mismatch excision repair)
Other MMR factors
DU500_00850
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
AAA_19
UvrD_C
UvrD_C_2
AAA_30
Herpes_ori_bp
AAA_22
AAA_11
AAA_12
AAA_25
Motif
Other DBs
NCBI-ProteinID:
AXG05090
UniProt:
A0A345DYR8
LinkDB
All DBs
Position
complement(159302..161146)
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AA seq
614 aa
AA seq
DB search
MSDDVTVTRLFGGPGSGKTTALLDRVDELLEDDDVSIRDVLVVSYTRAAAAEVRERLAER
LDTSPRALQGNVCTMHAKAYELLDLSRGDVVGESDKEEFCEEYGVEYEDEYGGAGRRTAR
STTLGNKIIATSQWLQRTQRDVADWYDVPFQWDVESVRLPPDIDPNAQEGNKYTPTWPTD
DDRIDVPEVIRAWRSYKGEHGLVGFADMLERVAQRSLVPHVDYLVIDEFQDITTLQYEVY
DEWKPHMEGVLIAGDDDQVVYAWQGADPNILLDAEVHEDVVLPNSYRLPSRILNVVNREI
RHIDKRQEKDLNPRKEGGVVEGIQSPSMFEVVRNVQHTVDSTEETLMILFRARYQMFQFI
DDFLPKGIPFSVMTDQRMWTDRLTDYVRAVEKLDAGDPITGLEARRLADMLQDSAFGTND
RDDFYDTLDDREEEADVEDIAEIEVSADVVTDHVPFMPDSAAAGDMLRKVTSFQRNSVDA
YFDGDYGGMDPSRVRVGTIHSAKGREADHVFVCTDLTEKVVEQMAASVDDPTDVPGVEEF
TAHTSPVPLLTDNERRVFYVGMSRARERLVLLENLIGGAPTLPVSVVLHNELRDEDVEEM
LEAAQETQAPEPEP
NT seq
1845 nt
NT seq
+upstream
nt +downstream
nt
atgagcgacgacgttaccgtcacccgtctcttcggtggtcccgggagcgggaagacgacg
gccctcctcgaccgcgtcgacgagttgctggaagacgacgacgtgagcatccgcgacgtg
ctcgtcgtctcctacacgcgtgccgcggccgccgaagttcgagaacgcctcgctgaacgc
ctcgacacctccccacgggcgttgcaggggaacgtctgtacgatgcacgcgaaggcgtac
gaactgctcgacctctcacgtggcgacgtggtcggcgagtccgacaaggaggagttctgt
gaggagtacggcgtcgagtacgaggacgagtacggcggcgccggtcggcgaacggccaga
tcgacgacgctcggcaacaagatcatcgccaccagccagtggctccagcgcacccagcgc
gacgtggccgactggtacgacgtgcccttccagtgggacgtggagtcggtccgcctcccg
cccgacatcgaccccaacgcccaggagggcaacaagtacacgccgacgtggccgaccgac
gacgaccggatcgacgtgcccgaggtcatccgcgcgtggcggtcgtacaagggcgaacac
ggcctcgtcggcttcgccgacatgctcgaacgggtggcccagcggtcgctcgtcccccac
gtcgactacctcgtcatcgacgagttccaggacatcaccaccctccagtacgaggtgtac
gatgagtggaaaccccacatggagggggtcctgatcgccggcgacgacgaccaggtcgtc
tacgcgtggcagggcgccgatccgaacatcctgctcgacgcggaggtccacgaggacgtg
gtgcttcccaactcctaccgcctgccctcgcgcatcctgaacgtcgtcaaccgggagatt
cgccacatcgacaagcgccaggagaaagacctcaacccgcgcaaggagggcggcgtcgtc
gaggggattcagagtccgtcgatgttcgaggtggtgcggaacgtccaacacaccgtcgac
agtacggaggaaacgttgatgatcctcttccgggcgcgctaccagatgttccagttcatc
gacgacttcctcccgaaggggattccgttctccgtcatgaccgaccagcggatgtggacc
gaccgcctcaccgactacgtccgcgccgtcgagaaactggacgccggcgaccccatcacg
gggctggaggcgcggcgcctcgccgacatgctgcaggattcggcgttcgggacgaacgac
cgcgacgacttctacgacaccctcgacgaccgggaggaggaggcggacgtcgaggacatc
gccgaaatcgaggtgtcggccgacgtggtgaccgaccacgtccccttcatgcccgattcg
gccgccgccggcgacatgctccggaaggtcacgagcttccagcgcaactccgtcgacgcc
tacttcgacggcgactacggcggcatggacccgagtcgcgtccgcgtcggcaccatccac
tccgcgaagggccgcgaggccgaccacgtcttcgtctgtaccgacctgaccgagaaggtt
gtcgagcagatggccgcgagcgtcgacgacccgaccgacgtgccgggcgtcgaggagttc
accgcacacaccagcccggttcccctcctcaccgacaacgaacgccgcgtcttctacgtg
gggatgagccgtgcgcgcgaacgcctcgtcctcctggagaacctcatcggcggcgccccg
accctccccgtcagcgtcgtcctgcacaacgaactccgcgacgaggacgtcgaggagatg
ctggaggcggcacaggagacccaggcacccgaacccgagccgtga
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