Haloplanus rubicundus CBA1113: DU500_01240
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Entry
DU500_01240 CDS
T05613
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit B
KO
K03044
DNA-directed RNA polymerase subunit B' [EC:
2.7.7.6
]
Organism
haj
Haloplanus rubicundus CBA1113
Pathway
haj03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
haj00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
DU500_01240 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
haj03021
]
DU500_01240 (rpoB)
Enzymes [BR:
haj01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
DU500_01240 (rpoB)
Transcription machinery [BR:
haj03021
]
Prokaryotic type
Archaeal type
RNA polymerase
Core subunits
DU500_01240 (rpoB)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_4
RNA_pol_Rpb2_7
RNA_pol_Rpb2_5
DUF8027
CAF1-p150_N
Motif
Other DBs
NCBI-ProteinID:
AXG05158
UniProt:
A0A345EHH8
LinkDB
All DBs
Position
complement(246347..248173)
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AA seq
608 aa
AA seq
DB search
MAQAREAKVYVNGSLVGTHPDPEQLAEQIREARRRGDVSDMVNVSIKERTREVIINADAG
RARRPLIVVEDGDPLLTDEEIEAVENGELSFEQLVERGYIEFIDAEEEEDIYVAVDEDEL
NERHTHLEIDPQLIFGIGAGMIPYPEHNASPRITMGAGMMKQSLGLPAANYRIRPDTRQH
LMHYPQLAMVKTQTTEQIGFDERPAAQNFVVAVMSYEGFNIEDALVMNKGSVDRALARSH
FFRTYEGEERRYPGGQEDRFEVPSQDVRGARGEDAYTHLDEDGLVNPETQVDENSVLLGK
TSPPRFLEEPDDMGGLSPQKRRETSVTMRSGEDGVVDTVTLMEGEDGSKLSKVSVRDERI
PELGDKFASRHGQKGVVGHLAPQEDMPFTQEGVVPDLVLNPHALPSRMTVGHVLEMLGGK
VGSLEGRRVDGTAFQGEDESELRGALEEHGFESSGKEVMYSGVTGEKIEAEIFVGTIFYH
KLYHMVSNKLHARSRGPVQVLTRQPTEGRAREGGLRVGEMEREVLIGHGAAMALKERLLD
SSDRENVYISAETGMVAVEDVEQRRVYDPVTGDEDDIHEIEVSYAFKLLLDEMIALGIRP
RLELEDAV
NT seq
1827 nt
NT seq
+upstream
nt +downstream
nt
atggctcaagcacgcgaggcgaaagtatacgtcaacggcagtctggtcggtacgcatccc
gaccccgaacagctcgcagaacagatccgcgaagcgcgccggcgcggggacgtcagcgac
atggtcaacgtctccatcaaggagcgcacgcgcgaggtcatcatcaacgcggacgcggga
cgggctcgccgcccgctgatcgtcgtcgaggacggcgacccgctcctcaccgacgaggaa
atcgaggcggtcgagaacggcgaactcagcttcgaacagctcgtcgagcgcggctacatc
gagttcatcgacgccgaggaggaggaggacatctacgtcgccgtcgacgaggacgaactc
aacgagcgtcacacccacctcgaaatcgacccacagctcatcttcggcatcggcgccggg
atgattccctaccccgaacacaacgcgtcgccacggattacgatgggtgcggggatgatg
aagcagtcgctcgggctgccggcggcgaactaccggattcgaccggacacgcgccagcac
ctgatgcattacccgcagctggccatggtcaaaacgcagaccacggaacagatcgggttc
gacgagcgcccggcggctcagaacttcgtcgtcgccgtcatgagctacgaggggttcaac
atcgaggacgcgctcgtgatgaacaaggggtcggtcgaccgcgcgctcgcccggtcgcac
ttcttccggacctacgagggcgaggagcgccggtatccgggcggtcaggaggaccgcttc
gaggtgccgagtcaggacgtccgcggcgcccgcggtgaggacgcctacacgcatctggac
gaggacggcctcgtcaaccccgagacgcaggtcgacgagaactcggtcctgctggggaag
accagtcccccgcgcttcttggaggagccggacgacatgggcggcctgtccccccagaaa
cgtcgcgagacgagcgtcacgatgcggagcggcgaggacggcgtcgtcgacacggtcacg
ctgatggagggcgaggacggctcgaagctctcgaaggtctcggtgcgggacgaacgcatc
cccgaactcggggacaagttcgcatcccgccacggccagaagggcgtcgtcggccacctc
gcaccccaggaggacatgccattcacgcaggagggcgtcgtccccgacctggtgctcaac
ccgcacgccctgccgtcgcggatgacggtcggccacgtgctggagatgctgggcggcaag
gtcggctcgctggaaggccgtcgcgtcgacgggacggcgttccagggcgaagacgagtcg
gaactccggggggcgctcgaagagcacggcttcgagtcctcgggcaaggaggtcatgtac
tccggcgtcacgggggagaagatcgaggccgagattttcgtcggcaccatcttctaccac
aagctgtaccacatggtgagcaacaagctgcacgcccgctcgcgcgggccggtgcaggtg
ctcacccgccagcccaccgagggtcgcgcccgcgagggtggcctgcgcgtgggcgagatg
gagcgtgaggtgctgatcggtcacggggcggcgatggcgctcaaggagcgcctgctcgac
tcctcggaccgcgagaacgtctacatcagcgccgagacggggatggtcgccgtcgaggac
gtggagcagcgccgggtgtacgaccccgtcactggcgacgaggacgacatccacgagatc
gaggtgagctacgcgttcaagctcctcctcgacgagatgatcgcgctcggcattcgaccg
cggctggaactcgaggacgcagtgtaa
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