Haloplanus rubicundus CBA1113: DU500_13910
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Entry
DU500_13910 CDS
T05613
Name
(GenBank) transcription initiation factor IIB 3
KO
K03124
transcription initiation factor TFIIB
Organism
haj
Haloplanus rubicundus CBA1113
Pathway
haj03022
Basal transcription factors
Brite
KEGG Orthology (KO) [BR:
haj00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
DU500_13910
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
haj03021
]
DU500_13910
Transcription machinery [BR:
haj03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIB
DU500_13910
Prokaryotic type
Archaeal type
TFB
DU500_13910
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TFIIB
Zn_Ribbon_TF
A2L_zn_ribbon
Zn_ribbon_PaaD
Zn_ribbon_LysW
Trm112p
Sigma70_r4
Zn_Ribbon_YjdM
Zn_ribbon_RRN7
Zn_ribbon_8
Ribosomal_S27e
Lar_restr_allev
Zn_ribbon_Elf1
Cyclin_C
Zn_ribbon_3
Cas12f1-like_TNB
Cyclin_N
Zn_ribbon_tTFIIB
DUF7577
Motif
Other DBs
NCBI-ProteinID:
AXG07432
UniProt:
A0A345E5G0
LinkDB
All DBs
Position
complement(2730092..2731045)
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AA seq
317 aa
AA seq
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MERPSRQRQRSQETEQEADESVDCPECGSDNIVTDADQGELVCDDCGLVIDERQIDRGPE
WRAFNHSERQSKSRVGAPITETMHDRGLTTTIDWKDKDAYGRSLSSEKRSQMHRLRKWQE
RIRTKDAGERNLQFALSEIDRMASALGVPRSVREVASVIYRRALNEDLIRGRSIEGVATA
ALYAACRQEGIPRSLDEVAEVSRVPQKEIGRTYRYISQELGLELKPVDPKQFVPRFASAL
DLSEEVQAKATEIIDVSAEQGLLSGKSPTGFAAAAIYAASLLCNEKKTQREVADVAQVTE
VTIRNRYQEQIEAMGFR
NT seq
954 nt
NT seq
+upstream
nt +downstream
nt
atggaacgtccgagccgccaacgccagcggagccaggagacggaacaggaagcggacgaa
tccgttgactgtcccgagtgcgggtcagacaacatcgtcacggacgcggatcagggagaa
ctcgtctgtgacgactgcggactggtaatcgacgaacggcagatcgaccgcgggccggag
tggcgggcgttcaatcactccgagcgccagagcaagtcccgcgtcggtgcgcccatcacg
gagacgatgcacgaccgcgggctgacgacgaccatcgactggaaggacaaggacgcctac
gggcggtcgctctcctccgagaagcgctcgcagatgcaccggctccgaaagtggcaggaa
cggattcggacgaaggacgcgggcgagcgcaacctccagttcgcgctgtccgaaatcgat
cggatggcctccgcgctcggcgtcccccgttcggtgcgtgaggtggcctcggtgatctat
cgacgcgcgctcaacgaggacctgattcgggggcgctccattgagggcgtcgccactgcc
gccctctacgccgcctgccgacaggagggcatcccccgctcgctcgacgaggtggccgaa
gtttcccgcgtcccgcagaaagagatcggtcgtacctaccgctacatctcacaggagctc
ggactggaactcaagccggtcgaccccaaacagttcgtcccccgctttgcctcggcgctc
gacctgagcgaggaggtccaggccaaggcgacggagatcatcgacgtctccgcggagcag
ggcctgctctctggcaagtcccccacgggcttcgccgccgccgccatctacgccgcgtcc
ctgctctgtaacgagaagaagacccagcgcgaggtggccgatgtggcccaggtgaccgag
gttaccattcgtaatcggtatcaggaacagatcgaggcgatgggcttccgctag
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