Haloplanus rubicundus CBA1113: DU500_14775
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Entry
DU500_14775 CDS
T05613
Name
(GenBank) ATP-dependent helicase
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
haj
Haloplanus rubicundus CBA1113
Pathway
haj03420
Nucleotide excision repair
haj03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
haj00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
DU500_14775
03430 Mismatch repair
DU500_14775
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
haj03400
]
DU500_14775
Enzymes [BR:
haj01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
DU500_14775
DNA repair and recombination proteins [BR:
haj03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
DU500_14775
MMR (mismatch excision repair)
Other MMR factors
DU500_14775
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
PDDEXK_1
AAA_19
UvrD_C_2
AAA_30
DUF2800
AAA_11
Gelsolin
ResIII
Motif
Other DBs
NCBI-ProteinID:
AXG07591
UniProt:
A0A345E5W9
LinkDB
All DBs
Position
2884831..2888268
Genome browser
AA seq
1145 aa
AA seq
DB search
MSDDSDEYPSWFPVPEEDVSPEPQQRAIIDSDAYPMRVLAGAGTGKTFTMVRKIEHLIDE
EDVSPDRILALTFTNNAADSMREKLNAKLGAAGYDIDAYTYHSICNEILTDYAYEAGIDP
DFEVATDAEKYAIVLDVLDDIEYRSVKPNVYGSDGYASGAASKLLNFIGSMKRSGITPDD
IDAFLGTADRVYELADLSERAEAIASDHLGGRSVSSVLDSLPDARADLVAERDALGTDGI
EASVRDFLDRLVDLCDELEAAFEAHEAGDRELPENAYKLPKYLLGGYASGAPTGIPDDLD
LELTDHLDSFLSDCLTARDLTAGYAAYERELDERNLIDFDGLVVETAALMDSPVGEEIAD
RWDYVFCDEFQDTDRLQFDLVTSLVTDDNLFVVGDDDQAIYEWRGAHVANITDELDRAFA
ALTDEPLEENFRSRQPILDLANEAIQKLDHRERHKTLKRVDDPAYDGDTVATVELPDEDD
ADGAGQIRTVVQNLVSGAAAALDESYDPGDIALLVRKNDHATPVIEEFEDAGIPYQVAGD
LATESVGVGTVTAYLKALARPEDEVSWNRVLLMRYRLCDADLRTLNAGDDPLVDTLRETP
LDEFGEPDRVAEARKHVTELLGIRDSASLSHLYRELTDITNIEWYLSEQERRDLAQLEDV
IEQYGDSAVQPPLTPEFIDSLEHYDSLFDESGSTPTSQPDVADDAVNVMTIHKSKGLDFP
VVLIPQVTADEWAPSSRTYDALETGLSDGPEAAFAEDFVTRDARETRRVFHVGITRAEDI
LVLQGGREEADPDETHPMVEAVDDILPSQTPWGPERGNLPIWTDVQACLPDEAVDWSDTL
ASETVGDIGGTIRHDGDELSLEVARDRLLNLARASIDGDLTTDGERSTLQVESLTGPSAP
YPSISHSYTSLTAYEECPRSHYLEYVVNAFPDYRRSTSDDGDGVSQRDIGVLFHDTAEQA
ANQSIRDRDVWYEICERLASQRRAEDALPAANACIGRYFELALSDYEIVDAEREFELDLD
GHELVGYIDAVYRLPDGELLVIDYKATERYRNLQEDKQLPIYLLACRDLYDEPVSRAGYA
YVGDVGPNVETRSFDESELRAVEDDVVSKMNRISNSSFGEYHDGEHCQWCRHNQLPCSPA
SLRSD
NT seq
3438 nt
NT seq
+upstream
nt +downstream
nt
atgagcgacgacagtgacgagtacccgtcgtggttcccggttccagaggaagatgtgtcg
ccggagccccagcagcgggccatcatcgactcggacgcgtacccgatgcgcgtgctcgcc
ggggcagggacggggaagacgttcacgatggtgcggaagatcgagcacctcatcgacgag
gaagacgtgtctccggaccggattctcgcgttgacattcacgaacaacgctgcggactcg
atgcgtgagaagctcaacgcgaaactcggtgcggccgggtacgacatcgacgcgtacacg
tatcactcgatctgcaacgagatcctcaccgactacgcgtacgaagccgggatcgatccg
gacttcgaggtcgccacggacgccgagaagtacgccatcgtgctggatgtcctggacgac
atcgagtaccggtcggtcaaacccaacgtgtacgggagcgacgggtacgcgtcaggggcc
gcgtcgaagctgctcaacttcatcgggtcgatgaaacgcagcggcatcacgcccgacgac
atcgacgctttcctcgggactgccgaccgcgtctacgaactcgccgatctctcggagcgc
gccgaggctattgccagcgaccatctgggcggccggtccgtgtcgagcgtgctggattcg
cttccagacgcacgcgctgacctcgtcgctgaacgcgacgcgctcgggacggacggtatc
gaagccagcgtccgcgacttcctcgaccgcctcgtggatctctgcgacgagctggaagca
gcgttcgaagcccacgaggcaggcgaccgggagttaccggaaaacgcgtacaagctcccg
aaatacctgctcggtggatacgcgagcggtgcgccgaccggcatcccggacgatctcgac
ctcgaactcaccgatcacctcgactcgttcctctcggactgcctcacggcccgagacctg
accgcgggctatgcggcctacgagcgcgagctagatgagcggaatctcatcgacttcgac
ggcctcgtcgtggaaacggctgcactgatggattcgccggtcggcgaagaaatcgcagac
cgatgggactacgtgttctgtgacgagttccaggataccgaccgacttcagttcgacctc
gtcacgtcactcgtcaccgacgacaacctattcgtcgtcggcgacgacgaccaggcgatc
tacgagtggcgcggggcgcacgtcgccaacatcaccgacgaacttgaccgggcgttcgcg
gcgctcaccgacgaacccttagaggagaacttccgctcccgacagccgattctcgacctg
gcaaacgaggcgatacagaagctcgatcaccgtgagcgccacaaaacgctcaaacgcgtc
gacgaccccgcgtacgacggggacacggtcgcgaccgttgagttgcccgacgaggacgac
gcggacggcgccggccagattcgaaccgtggtacagaacctcgtgagcggtgcggcggcg
gccctcgacgagtcgtacgatccaggcgacatcgccctgcttgtccggaagaacgaccac
gccacccccgtcatcgaggagttcgaagacgccggcatcccgtaccaggttgctggcgat
ctggccacggaatccgtcggcgtcggcaccgtgaccgcctacctgaaggcactcgcgcgg
ccggaagacgaagtgagctggaatcgcgtcctcctgatgcggtaccggctctgcgatgcg
gacctccgcacgctcaacgcgggcgacgacccgctcgtggacacgctgcgcgagacgccg
ctcgacgagttcggggaacccgaccgcgtcgcagaggcccgtaagcacgtcacggaactc
ctcggcatccgtgactcggcgtctctcagccacctgtaccgcgaactcacggacatcacg
aacatcgagtggtatctcagcgaacaggagcgccgggatctcgcccagctggaggacgtc
atcgaacagtacggggacagtgctgtccaaccaccgctcacgccggagttcatcgactcg
ctcgaacactacgactcgctgttcgacgagagcggctcgacaccgacgagtcagccggac
gtcgccgacgacgcggtcaacgtgatgaccatccacaagagcaagggcctggacttcccg
gtcgtcctcatcccgcaagtcacagccgacgagtgggcaccgagttcacgcacctacgac
gcgctcgaaaccggcctctcggacgggccggaggcggcgttcgccgaggacttcgtcacg
cgcgacgcccgcgaaacccgtcgcgtgttccacgtcggaatcacgcgcgccgaggacatc
ctcgtgttgcagggaggacgagaggaagccgaccccgacgaaacgcatccgatggtagag
gcagtcgacgacattctgccatcccaaaccccgtggggaccggagcgggggaaccttccg
atctggaccgacgtgcaagcgtgcctcccggacgaggcggtcgactggagcgacacgctg
gccagcgagactgtcggggatatcggtggcacaatcagacacgacggcgacgaactctca
ctcgaggtagcgcgcgaccgcctgttgaacctcgcgagggcatccatcgacggagacctc
acgacggacggtgagcgatcgacgctccaggtcgaatcgttgactgggccctcggcaccg
tatccgtcgatctcacacagctacacgtcgctgacggcctacgaggaatgcccgcgcagt
cattacctcgagtacgtggtcaacgccttccccgactatcggagatccacaagcgatgat
ggagacggcgtgtcacaacgcgatatcggcgtgctcttccacgacactgcggagcaagcc
gcgaaccagtcgattcgtgatcgggacgtgtggtacgaaatctgcgaacggctcgccagc
cagcggcgagcggaagacgcactccctgctgcgaacgcgtgcatcggccggtacttcgag
ttggcgttgagcgactacgagatcgtggacgcggagcgagagttcgaactcgatctcgac
gggcacgaactcgtcggatacatcgacgccgtctaccggctgccggacggcgagttactc
gtcatcgattacaaggcaactgaacggtatcggaacctgcaggaggataagcaactcccg
atctatctgttggcctgccgcgacctgtacgacgaaccagtctcacgcgcaggctacgcc
tacgtcggcgatgtcggcccgaacgtcgaaacgcgttcgttcgacgaatcagaacttcgt
gcggtcgaggacgacgtcgtgagcaaaatgaatcggatctcgaattcgtcgttcggagag
tatcacgacggtgagcactgccagtggtgtcgacacaatcagcttccgtgttccccagca
tcgctacggagtgactga
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