Halomonas sp. KO116: KO116_01593
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Entry
KO116_01593 CDS
T03800
Name
(GenBank) exodeoxyribonuclease V, beta subunit
KO
K03582
exodeoxyribonuclease V beta subunit [EC:
3.1.11.5
]
Organism
hak
Halomonas sp. KO116
Pathway
hak03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
hak00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
KO116_01593
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
hak03400
]
KO116_01593
Enzymes [BR:
hak01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
KO116_01593
DNA repair and recombination proteins [BR:
hak03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
KO116_01593
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
UvrD_C_2
PDDEXK_1
AAA_11
AAA_25
Motif
Other DBs
NCBI-ProteinID:
AJY50078
LinkDB
All DBs
Position
complement(1705652..1709530)
Genome browser
AA seq
1292 aa
AA seq
DB search
MSQPEPLNPLSLPLHGSRLIEASAGTGKTFTIALLYVRLVLGGHSVDDDTAFIRPLTPPE
ILVVTFTNAATQELRERIRNRLVEAAEVFRKAPDAKEAGHEEGLFPGMEKVAPKDGFTAP
SQWPASVPPAHDPLLLELRNQYDPATWPACSRRLALAAEWMDEAAVSTIHSWCYRMLREH
AFDSGSLFSLNLENDQRELEQEVVRDYWRSFYYPLDSDALGIVTRYWKSPDDLHAPLQRL
LPESEALGDEKPEPRETLAATQAERAAQLSELKAPWAAWIDELVPALEEAATRKAFKGQS
FNAKSRANWLGALREWCETDADRPALTDAAWKRMTPDGMADIWKEGAPPCPQAWEALAQL
PKVLDALPEPRNDLLIHAVQWCRARLEREQERRAEMGPNDLLTHLDRALKGPNREALAAQ
IQRQFPVALIDEFQDTDPIQYRIFNAVYDVATPGRDSAILLIGDPKQAIYAFRGADIFTY
LQARHDTDGRHVTLGTNFRSSRAMVAAVNHCFSYADQHDAGAFLFRADGGGNPLPFNPVD
AKGTKDTLVLNGQPLPAMTLWPLESDEPLSKTAYQTEMAERCASHMAALLEAGRQQQAGF
AKGFAKEADDKGDNGKQSLTPLAPSDMAVLVNGLQEARAIRLALASRGIKSVYLSDHDKV
FSSPIAPQLAIWLRACAEPQANSRQAEAKLRAALATPVIGLSLEELDHLNQSELAWEARV
EQFSDYHRLWQRQGVLPLVRRLMVDFDIAARLLGEFAEGERLLTDLLHLGEMLQHASQEL
DGEHALIRFLAEAIADPDSHGDSHKLRLESDADLVKVVTIHKSKGLEYPLVFLPFIANHR
PVSDTDLPLRWHDSEGTLQLSLSADEATLATADRERLGEDLRKLYVALTRARHATWLGLA
PLKGSENSAIGHLINGGKAIAPSGFTKALSELVEGSDIELSDAPEPTALRFTPAPEQQAL
GHARTPLRPAREQWWIASYSALRTSGAVSGAISGAIPTALPTPTPEPTTPQEATTLEVLD
EPHDNAINTEAFHLHRFPRGPGPGTFLHGLLEWAGQLGFIKALEDPAAREDMLRRRVQLR
GWQAWHDTLAGWFEELLATPLPLPQPLSHPGEGGQVALSELGSYQVELEFWFAAHQVGTR
KLDELVSDHLLPGVSRPALDADTLNGMLKGFIDLAFEHEGRFYVLDWKSNYLGSNDSAYT
FDALRNAMLEKRYDLQAAIYLLALHRLLKARLPDYDPHQHLGGSMTVFLRGSRTAARGVH
AVPAPVALIEALDALFAGTAAEPAATNQEVVV
NT seq
3879 nt
NT seq
+upstream
nt +downstream
nt
atgagccagcctgaaccactcaatccactaagcctcccgcttcacggcagccgactgata
gaggcaagcgctggcaccggcaaaacctttaccatcgccctgctctacgtgcgattggta
ctcggtggccacagcgttgacgacgacaccgcgtttatccgcccgctcacgccgccggaa
atcctggtcgtcaccttcaccaacgccgccacccaagagctacgcgaacgtatccgcaac
cggttggtagaagccgcagaagtgtttcgtaaggctccagacgcgaaggaagcaggtcac
gaagagggtctttttccagggatggaaaaagtagcgcccaaggacgggttcacagcgccc
tcgcagtggcctgcttccgtgccacctgctcatgatcccctgctgctagaactccgcaac
caatacgaccccgccacctggcccgcctgttcgcggcgcttggcactggctgccgaatgg
atggacgaagccgcggtttccaccatccacagctggtgctaccgcatgctgcgcgaacac
gccttcgacagcggcagcctgttctccctcaacctggaaaacgaccagcgcgaactcgaa
caagaagtggtgcgcgactactggcgcagcttctactacccgctggacagcgacgccctc
ggcattgtcacccgctactggaaatcaccagacgacctgcacgccccgctgcaaaggcta
ctgcccgaaagcgaagcgctaggcgacgaaaagcctgaacccagagagaccctggccgcc
acccaggctgaacgcgccgcccagctcagcgaactcaaagccccctgggccgcctggatc
gacgaactggtgcccgccctggaagaggccgccacacgcaaagccttcaagggccagagc
ttcaacgccaaaagccgcgccaactggctaggcgcactacgtgagtggtgcgaaacggac
gctgaccgccccgcgctcaccgacgccgcctggaaacgcatgacaccagacggcatggcc
gatatctggaaagaaggcgcaccgccctgcccgcaagcctgggaagcgctggcacagcta
ccgaaagtgctggatgccctgcccgagccgcgcaacgacctgctgattcacgccgtacag
tggtgccgcgcccgattggaacgcgaacaggaacgccgcgccgagatgggccccaacgac
ctgctcacccacctggatcgcgccctgaaaggccccaacagggaggccctggccgcgcag
atccagcgccaattccccgtggcgctgatcgacgagttccaggataccgacccgatccag
taccgcatcttcaacgccgtgtatgacgttgcaacgcccggtcgcgacagcgccatcctg
ctgattggcgaccccaagcaggcgatctacgcctttcgcggcgcggatattttcacctat
ctgcaggctcgccacgacacagatggccgccacgtcacgctgggcaccaacttccgctcc
agccgcgccatggtagcggcggtcaaccactgcttcagctacgccgaccagcacgatgcc
ggcgcctttctgttccgtgccgatggtggcggcaacccgctgccgtttaacccggttgac
gccaaaggcaccaaggacacgttggtgctcaacggccaaccgctacccgcgatgaccctg
tggccgctggaaagcgacgagccgctctccaaaaccgcctaccaaaccgagatggccgag
cgctgcgcctcgcacatggccgcgctactggaagcaggccgccaacaacaggcgggcttt
gcaaaaggctttgccaaagaggctgatgacaaaggcgataacggaaagcaatcactcact
ccgctggccccctcggacatggcggtgctggtcaacggcctgcaggaagcgcgggcgatt
cgactggcgctggccagccggggcatcaagagcgtctacctttccgatcacgacaaggtg
ttcagttcccccatcgccccgcagttggccatttggctgcgcgcctgcgccgagccacag
gccaactcgcgccaagcggaagccaagctgcgcgccgccctcgccacaccggtgattggg
ctcagccttgaggagcttgatcacctcaaccagagcgagctggcttgggaagcacgggtc
gagcagttcagcgactaccaccgcctatggcagcgccaaggcgtgctgccgctggtgcgc
cgtttgatggtcgattttgatatcgccgcgcggctgctgggcgagttcgccgagggtgag
cgtttgctaaccgacctgctccacctgggtgaaatgttgcagcacgccagccaggaactg
gatggcgaacatgcgctgattcgctttctggcagaagccatcgccgacccggatagccac
ggcgatagccacaagctgcgcctggagagcgacgccgatttggtcaaggtagtgaccatt
cacaaatccaaggggctggagtacccgctggtgttcctgccgtttatcgccaaccaccgc
ccagtcagcgacaccgacctgccactgcgctggcacgatagcgaaggcacactgcaactc
agcctaagcgccgatgaagccacgctggccaccgctgaccgcgaacggctgggcgaagac
ctgcgcaagctctatgtggcactcacccgcgcccgccacgccacgtggcttgggctggca
ccgctaaaaggcagcgagaacagcgccatcggccacctgatcaacggcggcaaagccatc
gcccccagcgggtttacgaaagccttgagcgaactggtggaaggcagcgatatcgagcta
agtgacgccccagagcccaccgcgctgcgctttacccccgcaccggagcaacaggcactg
ggccacgcccgcacgccgttgcgccccgcccgagaacagtggtggatcgccagctactcg
gcgctgcgtacctcgggggctgtctcaggggctatctcaggagcgataccgacggcgcta
ccaacgcccacgccagaacccactacgccccaggaagccaccaccctggaagtgctggac
gagccccacgacaacgccatcaacaccgaagcgtttcacctgcaccgctttccccgaggc
ccagggccaggaacgtttctgcacgggcttttagagtgggcgggccagctaggctttatc
aaagcgctggaagaccccgccgcacgggaagatatgctgcggcggcgggtacagctacgc
ggctggcaggcgtggcacgacaccctggcgggctggtttgaagagctgctcgctacgcct
cttcccctaccacaaccgctttcacatcccggcgaaggcggccaggtagcgctaagcgaa
ctaggcagctatcaggtagagctggagttctggtttgccgcccatcaggtgggaacgcgc
aaactcgacgaactggtaagcgaccacttactgcctggggtgtcccgccctgcacttgat
gccgacacccttaacggcatgctcaaaggctttatcgacttggccttcgagcatgaaggt
cgcttctatgtgctcgactggaaatccaactacctgggcagcaacgacagcgcctacacc
tttgatgccctacgcaacgccatgctcgaaaagcgctacgacctgcaagcggcgatctac
ctgctcgcgctgcaccggctgctcaaagcacgcctacccgactacgacccgcaccagcat
ttaggcggctcgatgacggtatttctgcgcggcagccgcaccgccgcccgcggggtacac
gccgtgcccgccccggtggcgctgattgaagcgctggacgccctctttgcaggcacagcg
gcagagccagcagcaaccaatcaggaggtggtggtatga
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