Halomonas sp. KO116: KO116_02616
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Entry
KO116_02616 CDS
T03800
Name
(GenBank) Helicase superfamily 1 UvrD-related protein
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
hak
Halomonas sp. KO116
Pathway
hak03420
Nucleotide excision repair
hak03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
hak00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
KO116_02616
03430 Mismatch repair
KO116_02616
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
hak03400
]
KO116_02616
Enzymes [BR:
hak01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
KO116_02616
DNA repair and recombination proteins [BR:
hak03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
KO116_02616
MMR (mismatch excision repair)
Other MMR factors
KO116_02616
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
UvrD_C_2
PcrA_UvrD_tudor
AAA_30
Viral_helicase1
AAA_12
ResIII
Motif
Other DBs
NCBI-ProteinID:
AJY51091
UniProt:
A0A0D5M4L7
LinkDB
All DBs
Position
complement(2804102..2806315)
Genome browser
AA seq
737 aa
AA seq
DB search
MKLTAEQQAVVNHTAGHARVAAVAGAGKTTTMAARVLHLLARGVPQKRILVLMFNRSAKD
DFQRRLASMAPAGQALPDVRTFHSLGHRLTQSLCRWGALAPRQLLSADWQLERLLRQASL
NVLRDAVERRDAALEGDRLETLAHFCGLVKAEMITPESLYERLNVDPDTDYFPAAFAEAE
RLLESEGVMTYADLLYRPLQALEEDSALRGRVEGFLDHVIIDEYQDINAAQQRLLSVLVG
SRAEVMAVGDANQCIYEWRGAKPDTMLENFTATFGEATDYPLSTTFRHGHALALTANHAI
AANQRRPNQLCLAAPNNPETRVSVGQGSRLLLDALMDWKAQGRAFNEASLLVRSWALSVP
FQLALLQAGIPFRLQREDRFVFRLPLVQALAGYLKLSRRPDLLRDPQQLLLLLSQPTPFV
ARERLQRLAHQLATTQQWPERHDPMLTALKPIQRRTLKKRWLLLCELPQLSAWPPAKLLR
HVVETIEAEKTLKRAAARRDKGEEDVRLLDVLIEQAQSVQDPDAFIELLERPVENQAGGV
LISTVHGAKGLEWPLVAVVGVNEEDFPHYSRDNPLSDERLEEERRLFYVAITRAQEQLLV
LHDGGVHRPSRFIAESAWQDSMRVASCLANPCAPEASLQVTSVGLVERYLTRLGRDDIVL
AAAHVEEHKATYSADTRFYPGQRLHHAVFGEGEVAAVEGNASDPVIDVRFDQAGRRRLIA
RRAPIQLLEGSQSAILS
NT seq
2214 nt
NT seq
+upstream
nt +downstream
nt
gtgaagttaaccgctgaacagcaggccgttgtgaatcataccgccggtcatgcgcgggtg
gcggccgtcgcaggcgcaggtaaaaccactaccatggccgctcgggtgctacacctgttg
gcccgtggtgtgccgcaaaagcgcattctggtgttgatgtttaaccgttccgccaaggat
gattttcagcgccgtttagcgtcaatggcgcctgccgggcaggcgctgccggatgtgcgc
acgtttcactcactaggccaccgcctaacccaaagcctatgtcgctggggcgcgcttgcg
cctcgtcagctattatccgccgattggcaattagagaggctgcttcgtcaagcgagcctt
aatgtgctgcgcgacgcagttgagcgccgtgatgctgcgctagaaggagatcggcttgaa
accttggcccacttctgcggcttggttaaagcagagatgattacccctgaatcgctctat
gaacgactcaatgttgacccggataccgactattttccggctgcttttgccgaggcggag
cggctactagagtcggaaggggtgatgacctacgctgatttactttatcgccctttgcag
gcgttagaggaagatagcgccctgcgtggtcgcgtcgaggggtttttggatcatgtcatt
attgacgagtatcaagatattaatgccgctcagcagcgccttttatccgtgctggtgggc
agccgtgccgaggtaatggcggtcggcgatgctaaccaatgcatctatgagtggcgtggc
gccaaacccgatacgatgctggaaaattttaccgccacctttggcgaggccaccgactac
ccgctatctaccacgttccgtcatggccatgccttggcgcttaccgctaatcatgccatt
gccgccaatcagcgccgccccaatcagctgtgtctggccgcgcccaataaccctgagacg
cgcgtctcggtagggcagggcagtcggctgttactggatgccttgatggattggaaggcc
caagggcgtgcgtttaacgaggccagtttgctggtgcgtagttgggcgctgtcagtacct
ttccagctggcgcttttgcaggcgggaattccgtttcggcttcagcgcgaggatcgtttt
gtctttcgtctgccgttggtacaggcactcgctgggtacttgaagctgtcgcgtcgtccc
gatctgctgcgcgatccgcagcaactattactgctgctttcccaaccgactccctttgtt
gctcgtgagcgactgcagcgattagcccatcagctggcgactacccagcagtggcctgag
cggcatgaccctatgttgacggcattaaagccgatccagcggcgtacgcttaaaaaacgc
tggttgctgctatgtgaattgcctcagctgagtgcatggccgcccgccaagctgttaagg
catgtagtggaaaccattgaggcggaaaaaacacttaaacgggcagcggcgcggcgcgat
aaaggtgaagaggatgtacgcttactcgatgtcttaattgagcaggcgcaaagcgttcaa
gacccagatgcctttatcgagctactggaacgcccggttgaaaatcaggcgggcggcgtg
ctgattagcacagtgcacggtgccaaagggcttgagtggccattggtagctgtggtgggt
gtcaatgaagaggattttccccactacagccgcgataatccgcttagcgatgagcgcttg
gaggaggagcggcggttgttctacgtagccatcacgcgcgcccaagaacagctattagtg
ctccatgatgggggcgtacaccgtcccagccgctttatcgccgaaagtgcctggcaagac
agtatgcgtgtggcctcttgtctagctaacccctgtgcgccagaagcatcgctgcaagtg
acatcggtggggctggttgagcgttatctgacgcgtttagggcgagacgacattgtgctc
gcagcggcacacgttgaagagcacaaggcaacttattcggccgatactcgcttttatccc
ggtcagcgtctgcaccatgcggtatttggtgagggtgaagtggcggcagtagagggaaat
gcgagcgacccggtgattgatgtgcgctttgaccaagctggccgacgcaggcttattgcc
cgccgagcgcccattcagctattggaaggctcgcaaagcgctattctctcttag
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