Halomonas sp. KO116: KO116_03322
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Entry
KO116_03322 CDS
T03800
Name
(GenBank) DEAD/DEAH box helicase domain protein
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
hak
Halomonas sp. KO116
Pathway
hak03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
hak00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
KO116_03322
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hak03019
]
KO116_03322
03009 Ribosome biogenesis [BR:
hak03009
]
KO116_03322
Enzymes [BR:
hak01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
KO116_03322
Messenger RNA biogenesis [BR:
hak03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
KO116_03322
Ribosome biogenesis [BR:
hak03009
]
Prokaryotic type
rRNA helicases
KO116_03322
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
AAA_30
Motif
Other DBs
NCBI-ProteinID:
AJY51793
UniProt:
A0A0D5M7M9
LinkDB
All DBs
Position
complement(3582835..3584550)
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AA seq
571 aa
AA seq
DB search
MTSTSVASPSFGDLALLPAVLSAVESQGYLVPSPIQAQTIPALLEGRDMLGQAQTGTGKT
AAFALPLLSRLELTRREPQVLVMAPTRELAQQVAASFSKYGQNLKGLEVATLCGGQEYRE
QLGALKRGAQVVVGTPGRIIDHLDRGSLKLDGLSALVLDEADEMLRMGFIDDVKRVVADT
PKDAQRVFFSATLPAEIERIVNRYLVNPVKVAIESGTTTGENIEQRIVRVDGGAKLEAVA
RILEVEPVDGAIVFVRTRAACTTLVEQLTARGVNAAGLSGDLDQSLRERTITRLKRGKVD
VLIATDVAARGLDVSRITHVINYDLPQDAEAYTHRIGRTGRAGRSGIAITFAGFREARKV
GWMEQATGQKMTEMPLPDEAAIRAHRDEVFHERVIASLTKGAEEQRALIERLIEEGHDPI
ELTCAFAAMARADEPPIGRLQAPRKEKPSRDGAPAGKPGARRERTSGPTEGMTRYRVSVG
HKDGVKPGQLVGALANEGGIEGARIGRIDIRNAFSVVELPSGLPATILTKMARARVAGRP
LEISEDSAPAERAPRRRRDEGDAPVRRRERA
NT seq
1716 nt
NT seq
+upstream
nt +downstream
nt
atgacctcgacttctgtcgcctcgccgagcttcggcgacctggctcttttgcctgctgtt
ctttctgctgttgaatcacagggctatttagttccctcgccgattcaagcgcaaaccatc
cctgcgctgcttgaaggccgcgatatgctgggccaagcacaaaccggcaccggtaaaact
gcagcgtttgcattaccgttactgtcacgtttagaactgactcgccgcgagccgcaagtg
ttggtaatggcgccaacgcgcgaattggctcagcaagtagctgcctcgtttagtaagtat
ggtcaaaacctgaaaggtctcgaagtggcgaccctatgtggtggccaagagtaccgtgaa
cagctgggcgcccttaagcgtggcgcgcaagtggttgtcggtaccccaggccggattatc
gaccacctggatcgcggtagcctgaagcttgatggcctgtccgctctagtgctggacgaa
gctgatgaaatgctgcgcatgggctttatcgacgacgtaaaacgcgtggttgccgatacc
ccgaaagatgctcagcgtgtgttcttctcggccacgctgccggctgaaattgaacgcatc
gttaaccgctatttggttaacccggtaaaagtggcgatcgagtcaggtaccactaccggc
gaaaacatcgaacagcgcattgtacgtgttgatggtggcgctaagcttgaagccgttgcg
cgtattcttgaagtcgagccggtcgatggcgctatcgtctttgtgcgtacccgtgccgct
tgtaccacgctagttgagcagctgactgcccgtggtgttaacgccgctggcctgtccggt
gatctggaccagagcctgcgtgagcgtaccattacgcgcttgaagcgtggcaaagtcgac
gtactgatcgccaccgacgtagccgcccgtggtcttgacgtatcgcgtattacgcacgtt
attaactacgatctgccgcaagatgcagaagcctacacgcaccgtattggtcgtacgggc
cgtgcgggtcgtagcggtatcgcgattacctttgctggcttccgtgaagcgcgcaaagtg
ggttggatggagcaggcaaccggccagaaaatgaccgaaatgccgctgcctgatgaagcc
gctattcgtgctcatcgcgatgaagtcttccatgagcgcgtgattgcctccttgacgaaa
ggcgccgaagagcagcgtgctctgattgagcgtctgatcgaagaaggccatgacccgatc
gagctaacttgtgcgtttgccgcgatggcgcgtgctgatgagccgccgattggtcgccta
caggcaccgcgtaaagagaagccctcgcgtgatggcgctcctgctggtaagccgggtgcc
cgtcgtgaacgcactagcggcccgaccgaaggtatgacgcgctaccgcgtctccgtaggt
cataaagatggcgtgaagccgggtcagttagtcggcgctcttgccaacgaaggcggcatt
gaaggcgcgcgtatcggtcgtatcgatatccgcaacgcgttctctgtagtcgaactgccg
agcggcttgcccgcaacgattctgaccaagatggcacgtgcccgtgtggccggtcgtccg
ttggaaatcagcgaagacagcgccccggctgagcgcgctccgcgccgccgtcgtgacgaa
ggcgatgcgccggttcgtcgtcgcgaacgtgcttaa
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