Halomonas sp. KO116: KO116_03734
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Entry
KO116_03734 CDS
T03800
Name
(GenBank) ATP-dependent DNA helicase, RecQ family
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
hak
Halomonas sp. KO116
Pathway
hak03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
hak00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
KO116_03734
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hak03019
]
KO116_03734
03400 DNA repair and recombination proteins [BR:
hak03400
]
KO116_03734
Enzymes [BR:
hak01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
KO116_03734
Messenger RNA biogenesis [BR:
hak03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
KO116_03734
DNA repair and recombination proteins [BR:
hak03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
KO116_03734
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
RecQ_Zn_bind
ResIII
AAA_22
Motif
Other DBs
NCBI-ProteinID:
AJY52201
UniProt:
A0A0D5M7S0
LinkDB
All DBs
Position
complement(4047427..4049433)
Genome browser
AA seq
668 aa
AA seq
DB search
MTSASPQQTLKAVFGFDDFRGGQQAVVSHVLKGHSTAAIFATGAGKSLCYQLPALHLPHL
TLVVSPLLALMQDQLAFLQARGIAAASIDSTQERDATREVMERAKRGELNILMVSVERLK
NERFRNFLRQVPISLLVVDEAHCLSEWGHNFRPDYLKLPDYQREFAIPQVLLLTATATPA
VIADMREKFAIAPEHIVTTGFYRPNLELLVAPAMEDRQQQLVAWLRPQMQPGGEAPTIIY
VTLQHTAEQVASALQAQGIAAQAYHAGLASQQRDEIQRQFMSGESHCIVATIAFGMGIDK
GNIRNVVHYDLPKSIENYSQEIGRAGRDGLPSTCLTMAGRDGLRVLENFVYGDTPEYSGI
VRLLEEIASAANTPDRQWEVLLNTLSRDTNIRLLPLKTLLVRLEMHGVIAPRFAFLAEYR
LRYHIEPEALVSRFEGERAAFVRLLVDHIPIARTWGTVDFERLLRVGQAQQVDASRSRVI
TALEYFQDKGWLTLEGKRMTDVYEICQSPVPIEALARQLYDDCLSRERIEIERLQAMLAL
FESESCLTRRLAEHFGDRTFDTPSDTEQGRCGHCSVCYGQPVTLPDAPPQPVPSNAEFQY
YAAPFIQRHTEQFGQPPCAHRLAHFLCGLTMPVFTPLKARRLEGFAVFEQRAYPQVREWV
ASRQKING
NT seq
2007 nt
NT seq
+upstream
nt +downstream
nt
atgacctcagcttcgccgcagcagacgctaaaagcagtattcggttttgacgactttcgc
ggcggccagcaggcagtggtatcgcacgtcttgaagggccactccacggcggcaattttt
gccaccggggcggggaaatcactctgctatcagctacccgcgctgcatctgccgcacctg
acactggtggtgtcgccgttgcttgccctcatgcaggatcagctcgcctttttgcaagcc
cgcggcattgccgccgcaagtatcgactccacccaagagcgcgacgccacccgcgaagtc
atggagcgggctaaacgcggcgagctgaacatcctcatggtctcggtagagcggttgaaa
aacgagcgcttccggaattttctccgtcaggtaccgatatcactattggtcgtcgatgaa
gcccactgcctctccgagtgggggcataacttccgacctgattatctcaaactgccggat
taccagcgtgagtttgccattccccaggtattgctgctcactgccaccgccactccagcg
gtgattgccgatatgcgcgaaaagtttgccatcgccccagaacatatcgtaactaccggc
ttttatcgcccaaaccttgagctgctggtcgcgccggccatggaagatcgccagcagcag
cttgttgcgtggctaaggccacaaatgcagccgggcggcgaagcgcccacgatcatctat
gtcacgctccagcacacggcagagcaggttgctagcgccctacaggctcagggcatcgct
gctcaggcgtaccacgcgggactggcatcccagcaacgtgacgagattcagcgccagttc
atgagcggcgagtcgcactgcatcgtggccaccattgcctttggcatgggcattgataag
ggcaatattcgcaacgtggtgcattatgacctgcctaaatccatcgagaactacagccag
gagattggccgggcaggtcgcgatggcctgccttccacctgcctgaccatggccgggcgt
gacggtctgagggtgctggagaacttcgtctacggcgacacgccggaatacagcggcatt
gttcgattgcttgaggagatcgcatccgccgccaacacgccagaccgccagtgggaagtg
ctgctcaacacgctttcccgcgataccaatatccgtctcctgccgcttaagacgctgctg
gtgcggctggaaatgcatggggtgattgcaccgcgttttgcgtttctggccgagtatcgg
ctgcgttatcacatcgagccggaggcgttggtgagccgtttcgaaggcgagcgggcggcc
tttgtgcgtctactggttgaccatatccccattgctcgcacctggggcacggtagatttc
gagcgcttgcttcgcgtgggacaggcgcagcaggtcgatgcctcccgcagccgggtgatc
accgcgcttgagtactttcaggataagggctggctgaccctggaaggcaagcggatgact
gatgtgtatgagatatgccagtcgcctgtgccgatagaagcgctggctcgccagctatac
gacgactgcctgagtcgtgaacgcatcgagatagaacggctacaggcgatgttggcgctc
tttgagtcggagagctgcctgacgcggcgattagcggagcacttcggtgatcgcacgttt
gacacgccatccgacaccgagcagggccgctgcgggcattgctcggtatgttacggccaa
cccgtaacgctgccggacgcgccgccgcagcctgtaccgagcaatgcggagtttcagtac
tatgccgctccgttcattcagcggcacactgagcagttcggtcagcctccctgcgcgcat
cggctggcgcattttctatgtggtctaaccatgcccgtgtttaccccgctcaaagcccgt
cgccttgagggcttcgccgtgtttgagcagcgcgcctatccacaagtgcgtgagtgggtg
gcgagtaggcaaaaaattaatggctaa
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