Halomonas sp. KO116: KO116_03777
Help
Entry
KO116_03777 CDS
T03800
Name
(GenBank) DNA polymerase III, alpha subunit
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
hak
Halomonas sp. KO116
Pathway
hak03030
DNA replication
hak03430
Mismatch repair
hak03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
hak00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
KO116_03777
03430 Mismatch repair
KO116_03777
03440 Homologous recombination
KO116_03777
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
hak03032
]
KO116_03777
03400 DNA repair and recombination proteins [BR:
hak03400
]
KO116_03777
Enzymes [BR:
hak01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
KO116_03777
DNA replication proteins [BR:
hak03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
KO116_03777
DNA repair and recombination proteins [BR:
hak03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
KO116_03777
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
tRNA_anti-codon
DNA_pol_IIIA_C
HROB
tRNA_anti_2
OB_POT1A
Herpes_IR6
Motif
Other DBs
NCBI-ProteinID:
AJY52244
LinkDB
All DBs
Position
complement(4093578..4097084)
Genome browser
AA seq
1168 aa
AA seq
DB search
MTVPFVHLRLHSEYSLVDGLVKLKSLVSTTAERSMPALALTDETNLFGLVKFYKAAQGAG
LKPIIGSDLWLQNPHDESHPYRLTLLAINDVGYRNLTELISKGWTYGQRQGRAILDKQWV
LEQSEGLIALSGAREGEIGRHLLSDHEPEARQLLEEWQAAFPERFYLELVRTGRPLEEAC
VHASVKLAIETGTPVVATNDVRFLERDDYWAHETRVAIGEGKALDDPRRERRYTEEQYLK
SPDEMAALFADIPEALENSVMIAERCSVNVRLGEIFLPEFEIPEGMTQDEFFRKVSHDGL
TDRLDFLFPAERYPRDSDEYKAIDQRYRDRLEFELNVIIQMGFPGYFLIVMDFIQWAKDN
SVPVGPGRGSGAGSLVAYAQKITDLDPIGYDLLFERFLNPERVSMPDFDVDFCMEKRDKV
IEYVAERYGRNAVSQIVTFGTMAAKAVVRDVARAQGRPYSLGDKLSKLIPFEVGMTLAKA
IEQEPALKEFIGNDEEAEEIWEMALKLEGTTRGTGKHAGGVVIAPTKLTDFSPLLCDEDG
SGLVVQFDKNDIEEAGLVKFDFLGLRTLTIIDWALEMVDKVRSVNDQGPLNIDSIPLDDA
PTFEMLKRAETTAVFQLESRGMKELIKRLLPDSLDDMIALVALFRPGPLQSGMVDDFINR
KHGRAEVSYPHPDYQHELLKPVLAPTYGIILYQEQVMQIAQVMAGYSLGQADMLRRAMGK
KKPEEMAKQRDGFMEGCAANGIDKDLAGNIFDLVEKFAGYGFNKSHSAAYALVSYQTAWL
KAHYPGPFMAAVMSTEMDNLDKVVPLIEECRNLKLTVTPPNVNVGGYKFTVDTDARVVYG
LGAIRGVGEGPIGAIVEAREADGPFKDIFDFCRRMDPKRMNKRTLEALIRSGALDTIGPN
RAVLFAAMEDALKAAAQNHTNQNLGMLDMFGDAFVEADDSDSNVYAEYINAREWTDRERL
SGEKDTLGLYLTGHPIDEYERELKRFVSTRISDLKPSRDPQRVAGLVVGVRTMKSKRGDT
MAFITLDDRTGRIEASLFGELFEQLRGQIEADQVLIVEGEVSSDEFSGGLRLRGKDVTPM
VTARIRYGQAVELALDAAQINGRLIETLRDSLTPYRDQEGLPVRLQYRHPAAVAWLELAD
EWKVAPSDDLLLALRDVQGQAGVQLRYR
NT seq
3507 nt
NT seq
+upstream
nt +downstream
nt
atgacggtcccgttcgttcatttacgtttgcacagtgaatactccctggtcgacggcttg
gttaaactcaaatcgctggtcagcacgactgctgagcggtcgatgccagcgctggcgctg
acggatgaaactaacctgtttggtttggttaaattctacaaagccgcccagggggcgggg
ttgaagccgatcatcggcagcgatttatggctgcaaaaccctcatgacgagtctcacccc
tatcggctaacgctgctggccataaatgacgttggctatcgcaaccttaccgagctgatc
tctaaaggctggacctatggccagcgccaggggcgggccattctcgataagcagtgggta
ttagagcagagcgaagggctgatagcgctttccggtgcgcgtgagggtgagattggccgg
cacctgctctctgatcatgagcctgaagcgcgtcagctgctcgaagagtggcaggctgcg
tttcccgaacgtttttatttagagctagtgcgcaccgggcgcccattggaagaggcctgc
gttcacgccagcgtcaagctggccattgagacaggcacaccggtggtggcgaccaacgac
gttcgctttttagagcgcgacgattactgggcccacgaaacccgcgtcgccatcggcgaa
ggtaaagcgctggatgacccacgccgtgaacgccgctacaccgaagagcagtacctaaaa
agccccgacgagatggcggcgctgtttgcggatattcccgaagcgctggaaaacagcgtc
atgatcgcagaacgctgcagcgtgaacgtgcgtctgggcgagattttcctacctgaattc
gaaattcctgagggcatgacccaggatgagttcttccgcaaggtctctcacgatggcctg
acggatcgactcgattttctcttccctgctgaacgctatccccgcgacagcgatgaatac
aaggcgatcgaccagcgataccgcgatcggctggagtttgagcttaacgttattatccag
atgggttttcctggctacttcttgatcgtaatggactttatccagtgggcaaaagataac
agcgttcctgtaggccctggacgcggctcaggtgctggctcgctggtggcttatgcgcaa
aagatcaccgaccttgacccgatcggctatgaccttctcttcgagcgcttcctgaacccg
gaacgtgtctccatgcccgactttgacgtcgatttctgtatggagaaacgcgataaggta
attgagtacgtggccgagcgttacggacgcaatgcggtatctcagatcgtgacgtttggc
accatggccgccaaggccgtggtgcgtgatgttgcacgcgctcaggggcggccctactcg
ctgggggataagctctccaagctgatcccctttgaagtgggcatgaccctggccaaagcc
atcgagcaggaacccgcgctcaaagagtttatcggtaacgacgaagaagctgaggaaatc
tgggagatggccctaaagctcgagggcaccacccgggggaccggtaagcacgccgggggc
gtggtcattgcgccgaccaaactgacggacttctctccgctgttatgcgacgaggacggt
tcaggcttggtggtgcaattcgacaaaaacgatatcgaagaggcggggctggttaagttt
gacttcctgggcctacgcacgctgacgattatcgactgggcgctggagatggtcgataag
gtgcgcagcgtcaatgaccaggggccgctcaatatcgacagcatcccgctggacgacgcg
ccgacctttgagatgctcaaacgcgctgaaaccaccgcggtgtttcagctcgaatcccgt
ggcatgaaagagttaatcaagcgcctgctgcctgactcgctagacgatatgatcgccctg
gtggcgctgttccgccccggcccgctgcagtcgggcatggtggatgactttatcaaccgt
aagcacggccgggccgaagtctcttatccacacccggattaccaacacgaactgttgaag
ccggtgctggcgcctacctacggcatcattctttaccaagagcaggtcatgcagatcgct
caggtaatggcaggctatagcctcggccaagccgatatgttgcgccgggccatgggtaag
aaaaagcctgaagaaatggccaaacagcgcgacggctttatggaaggttgtgccgccaac
ggtatcgataaagacctcgccggtaacatctttgacttggtggaaaaattcgccggttac
ggttttaacaagtcgcactcggccgcctacgccttggtttcctatcaaacggcgtggcta
aaagcccactatccagggcctttcatggccgcggtgatgtccacagagatggacaacctg
gataaggtggtaccgctgattgaggagtgtcgcaacctcaaactcacggtgaccccaccg
aacgttaacgtcggtggctataaattcaccgtcgataccgatgcgcgggtggtttatggc
ctgggcgcgattcgtggcgtgggcgaaggaccgattggtgccattgttgaagcccgtgag
gcagacggtccgtttaaggatatcttcgacttctgtcgccgcatggatcccaaacggatg
aataagcgcaccctggaagcactgattcgctccggcgcgctggataccatcggtcccaac
cgcgcggtgctattcgctgccatggaagacgcgctgaaagccgccgcccagaaccatacc
aatcaaaacctgggtatgctggatatgttcggcgacgccttcgttgaagccgacgacagt
gatagcaacgtttacgccgaatatatcaacgcccgagagtggaccgatcgcgagcgcctc
tcgggggagaaagataccctggggctttatctgacggggcacccgattgatgagtacgag
cgcgaattaaagcgcttcgtgtctacgcgaatcagcgatttaaagccctcccgcgacccc
cagcgtgtggcaggtctcgtggtcggcgtgcgtaccatgaagtccaaacgcggcgatacc
atggcgtttattaccctggacgaccgcaccgggcgcattgaagcctcgctgtttggggag
ttattcgagcagttgcgcggtcagattgaggccgaccaagtgctcatcgtagagggcgag
gtttccagcgatgaattctctggcggcctgcgcctgcgcggtaaagacgtcacaccgatg
gtgacggcgcgtattcgctacggccaagcggtggagctggcgctggacgccgcccaaatc
aatggtcgcttaattgaaaccctgcgcgacagcctgacgccgtatcgcgatcaagagggc
ttgccggtgcgcctacagtatcgacacccggcagctgtcgcgtggctggaacttgccgat
gagtggaaagtcgcgccaagcgacgatttactgctggcgctgcgggatgtgcagggccag
gcaggcgttcagctacgttatcgttaa
DBGET
integrated database retrieval system
