Hemitrygon akajei (red stingray): 140714200
Help
Entry
140714200 CDS
T11019
Symbol
pdlim1
Name
(RefSeq) PDZ and LIM domain protein 1 isoform X1
KO
K23353
PDZ and LIM domain protein 1/2/3/4
Organism
haka Hemitrygon akajei (red stingray)
Pathway
haka04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
haka00001
]
09140 Cellular Processes
09142 Cell motility
04820 Cytoskeleton in muscle cells
140714200 (pdlim1)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04990 Domain-containing proteins not elsewhere classified [BR:
haka04990
]
140714200 (pdlim1)
Domain-containing proteins not elsewhere classified [BR:
haka04990
]
LIM domain-containing proteins
PDZ-LIM family proteins
140714200 (pdlim1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF4749
PDZ
PDZ_6
LIM
PDZ_2
CASP_C
SNAPC3
Motif
Other DBs
NCBI-GeneID:
140714200
NCBI-ProteinID:
XP_072881269
LinkDB
All DBs
Position
21:33329055..33414243
Genome browser
AA seq
389 aa
AA seq
DB search
MSQLRISLRGPAPWGFRLVGGKDFEQPLTISRITPGSKAEAAKLCVGDVILDIDGEKTDG
MTHLDAQNKIKGCGDELTFLISRSESKIWSPLTNENGKSHPYRMNLASDHQRPAQFQRAF
SLANPSVRRTSSGGSPLSPTGFFRAPLATVYAPTFSCSPSAFRRRHSTSSIPSQLRVGPE
ELKEAAQYCPAGPVEVEVPGLRVVHTQFNSPLQLYSQQNIMDSLQGQISTISPTAGSLEP
MKLPCKPVVDTESEVYKMLQENQETEEPPRQSASFRVLQEILESEDNGQTEKPSGFRKVK
APATKAGSTVGSAQKLPVCEICDTGIVGMIVKVRDRFRHPECYVCSDCGTNLKQKGHFFV
GDAIYCEQHAKERSTPPEGYDVVTVFPKS
NT seq
1170 nt
NT seq
+upstream
nt +downstream
nt
atgtcccaactccggatcagtctgcgcggcccggcgccctggggcttcaggctggtcggg
ggcaaggacttcgagcagccgctcaccatctccaggataactccagggagtaaagcggag
gctgccaagctgtgtgttggggatgtaatcttggacattgatggagaaaaaactgatgga
atgacgcacttggatgctcagaacaagatcaaaggatgtggagatgagctgacgttcctg
atttccaggtctgagtcgaaaatttggtcacctctaactaatgagaatggaaagtcgcat
ccgtatcggatgaacttggcatctgatcatcagagaccagctcagtttcagcgcgcattc
agtctagcaaatccatccgttagacgcacgtccagtggcggcagcccactctctcctact
gggttctttcgagctcctcttgccactgtatatgctccaactttctcttgctcgccatca
gctttccgcaggaggcacagtacctcctccatcccaagccaactccgggtcggacccgag
gagctgaaggaagctgcccagtactgtccagcaggtccagtggaggtggaggtgccaggg
cttcgagtggttcacactcagtttaattctcctctgcaactttattctcagcaaaatatt
atggacagtttgcagggacagatctcaacaataagtcccactgctggcagtttggagcca
atgaaactgccatgtaagcccgtggtggacacagagtcggaagtttacaaaatgctacag
gaaaaccaggaaacggaggagccacctcggcagtcagcctcgttccgtgtgctgcaggag
atcctggaaagcgaggacaatggacagaccgagaagccgtctgggttccgaaaagtaaag
gctcctgcaaccaaggctggctcgacggtgggaagtgcgcagaagctacctgtgtgtgag
atctgtgacaccgggatagtgggaatgattgtgaaagtgcgcgaccggttccgccatcca
gaatgctatgtctgctcagactgcggaactaacctgaagcagaagggacacttctttgtg
ggggacgccatctactgcgagcagcacgccaaggagcgatccacgcctcctgagggttac
gatgtcgttaccgtcttcccaaagtcataa
DBGET
integrated database retrieval system
