KEGG   Hemitrygon akajei (red stingray): 140715212
Entry
140715212         CDS       T11019                                 
Symbol
taf5
Name
(RefSeq) transcription initiation factor TFIID subunit 5
  KO
K03130  transcription initiation factor TFIID subunit 5
Organism
haka  Hemitrygon akajei (red stingray)
Pathway
haka03022  Basal transcription factors
Brite
KEGG Orthology (KO) [BR:haka00001]
 09120 Genetic Information Processing
  09121 Transcription
   03022 Basal transcription factors
    140715212 (taf5)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:haka03021]
    140715212 (taf5)
   03036 Chromosome and associated proteins [BR:haka03036]
    140715212 (taf5)
Transcription machinery [BR:haka03021]
 Eukaryotic type
  RNA polymerase II system
   Basal transcription factors
    TFIID
     140715212 (taf5)
   Coactivators
    SAGA/TFTC/STAGA complex
     140715212 (taf5)
Chromosome and associated proteins [BR:haka03036]
 Eukaryotic type
  Histone modification proteins
   HAT complexes
    PCAF complex
     140715212 (taf5)
    STAGA complex
     140715212 (taf5)
    TFTC complex
     140715212 (taf5)
    SAGA complex
     140715212 (taf5)
    SLIK complex
     140715212 (taf5)
SSDB
Motif
Pfam: Beta-prop_WDR5 WD40 Beta-prop_WDR3_1st Beta-prop_THOC3 WD40_Prp19 TFIID_NTD2 Beta-prop_WDR3_2nd WD40_WDHD1_1st WD40_CDC20-Fz WD40_Gbeta Beta-prop_WDR36-Utp21_2nd Beta-prop_CAF1B_HIR1 Beta-prop_EML_2 Beta-prop_TEP1_2nd EIF3I WD40_MABP1-WDR62_2nd WDR55 Beta-prop_WDR90_POC16_2nd Beta-prop_EML WD40_MABP1-WDR62_1st Beta-prop_WDR36-Utp21_1st Beta-prop_IFT122_1st NBCH_WD40 Beta-prop_WDR75_1st Beta-prop_SCAP ANAPC4_WD40 Beta-prop_TEP1_C Beta-prop_Aladin Beta-prop_VPS8 Beta-prop_IFT140_1st Beta-prop_RIG_2nd WDR90_beta-prop_4th Beta-prop_WDR41 Beta-prop_Vps41 Beta-prop_EIPR1 Beta-prop_DCAF4 WD40_RFWD3 Beta-prop_HPS5 Beta-prop_WDR19_1st Beta-prop_Nup120_160 Beta-prop_SPT8 WD_LRWD1 Beta-prop_DCAF12 Tricorn_2nd VPS8_N Cytochrom_D1 Beta-prop_ACSF4 PROPPIN RAB3GAP2_N Beta-prop_WDR11_2nd LisH
Other DBs
NCBI-GeneID: 140715212
NCBI-ProteinID: XP_072883176
LinkDB
Position
23:18990209..19007547
AA seq 735 aa
MVKMAAVPEPPSDGPSPSPVVSVAPTSTPTPTPAPAVAAASPAPSPSPSPSPTLAVKTET
AESPGEGGRPAAGPGPELNERQTLLAVLQFLKKNRFREAEETLRREASVQDALDDALRTA
GPRGPDSVHQPDVSSVLSAYSNQGDPSLYEEYYSGLKAFIEAALDALKAELASLLYPVFV
HLYLELVYNEHEREARHFFQRYHGDQEGYYQDDLRVLAGLSKKEHMQGNETVLDFRTSKF
VLRISRDSYQCLKRHLQERHNNQIWNIVQEHLFIDVFDGMPRSKQQIELTSGGMAGEAKR
EANKTKVFFGLLKEPEIELPLDDEDEEGENEEGKPKKKKPKKDSLGAKSKKQDPNAPPQN
RIPLPELKDSDKLDKIMIMKEAAKRVKLGPDCLPSICFYSFLNAYQGLTAVDFTDDSSLI
AGGFADSTVRVWSITPKKLRSVKGATDLSLIDKESEDVLERIMDEKSACEFKMLLGHGGP
VYGTSFSPDRNYLLSSSEDGTVRLWSLQTFTCLVGYKGHNYPVWDTQFSPYGYYFISGGH
DRVARLWVTDHYQPLRIFSGHLSDVTCTRFHPNSNYVVTGSADRTIRLWDVLNGNCVRIL
TGHKGPIHSLVFSPNGRYLASGATDGRVLLWDIGHGLLVGELKGHTDTIYALKFSRDGEI
LASGSMDHTVKMWDTVKAFEDLETDDFSTATGHINLTDNSQELLLGSYMTKSTPVIGLHF
TRRNLLLAAGAYNPQ
NT seq 2208 nt   +upstreamnt  +downstreamnt
atggtgaaaatggcggcggtgccggagccgccgagtgacgggccgagcccgagtcccgtt
gtctccgtggcgcccacctccacccccactcccaccccggcccccgccgtcgccgctgct
tctccggcgccctcgccgtcgcccagcccgtcgccaacgctggcggtgaagacggagacg
gcggagagcccgggggagggaggcaggccggcggcgggtcccggccccgagctcaacgag
cgccagaccctgctcgccgtgctccagttcctgaagaagaaccgcttccgcgaggccgag
gagacattgcggcgggaggccagcgtgcaggatgcgctggacgacgcgctgagaacggcc
ggtccccgcggccccgactcagtgcaccagcccgacgtcagctcggtgctgtccgcctac
agcaaccagggagaccccagcctctacgaggagtactacagcggcctgaaggccttcatc
gaggcggcgctggacgcgctgaaagccgaactggccagcctgttgtacccggtgttcgtg
cacctgtacctggagctggtctacaacgaacacgaacgtgaggcccggcacttcttccag
aggtaccatggagatcaggaaggttactaccaggatgacctgcgagtgctggctgggctg
tccaagaaagaacacatgcagggtaacgagacggttctagacttccgcaccagcaagttt
gtgctgcgcatctcacgtgactcctaccagtgcctgaaacgccacctgcaggagaggcac
aacaaccagatctggaacatcgtgcaggagcacctgttcatcgacgtctttgacgggatg
cccaggagcaagcagcagattgagttaacgtctggaggaatggcaggcgaggccaagagg
gaggccaataaaaccaaggtgttcttcggactgttgaaggagcctgagattgagctgcct
ctcgatgatgaagatgaggaaggagaaaatgaggaggggaaaccgaagaagaagaagccg
aaaaaggacagcctgggggcaaagagcaagaagcaggaccccaatgcccctccacagaac
agaattccgcttcctgagctgaaagattctgacaagctggacaagataatgataatgaag
gaagctgcaaagagggtgaagcttggtccagactgtctaccttccatctgcttttacagc
ttcctaaacgcctatcagggactcaccgcagttgatttcacggatgattccagtctgata
gcgggtggattcgctgattccaccgtcagagtatggagcattacgccgaagaagctgcgg
agcgtcaaaggggccacagatcttagtttaatcgacaaagagtcggaagatgtgctggag
agaataatggacgagaagtctgcctgcgagtttaaaatgttactaggacatggtggccct
gtgtatgggaccagcttcagtcctgacaggaattaccttttgtccagctcggaggatggg
acggtgaggctgtggagtctgcaaaccttcacctgccttgtgggttacaagggacacaac
tatccagtgtgggacacacagttctctccctatggctattacttcatttcaggaggtcat
gatcgtgtggcacggctctgggtaacagatcactatcaacctctgcgaatattctccggt
catctctcagatgtcacctgcacgagatttcatcccaactccaattatgtcgtcactgga
tctgcagaccggaccatccggctgtgggatgttctaaatggcaactgcgtccgaatcctc
actggacacaaggggccaatccactcgctagtgttttctccaaacggcaggtacctggcc
tcgggtgccacagatgggcgtgtgctgctgtgggatattgggcacgggcttctcgtggga
gagctgaagggtcacaccgatactatctatgccctgaagtttagccgtgacggggagatt
ttagcatcagggtccatggatcatactgtgaaaatgtgggatacggtgaaagccttcgag
gaccttgagacggatgatttcagcactgctactgggcacatcaacttgactgacaactcg
caggagctgctgctgggctcctacatgaccaaatccacgcctgttatcggcctgcacttc
acccgccgtaacctgctactggccgcaggggcatacaatccacagtga

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