KEGG   Hemitrygon akajei (red stingray): 140716020
Entry
140716020         CDS       T11019                                 
Symbol
lig1
Name
(RefSeq) DNA ligase 1 isoform X1
  KO
K10747  DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7]
Organism
haka  Hemitrygon akajei (red stingray)
Pathway
haka03030  DNA replication
haka03410  Base excision repair
haka03420  Nucleotide excision repair
haka03430  Mismatch repair
Brite
Enzymes [BR:haka01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     140716020 (lig1)
    6.5.1.6  DNA ligase (ATP or NAD+)
     140716020 (lig1)
    6.5.1.7  DNA ligase (ATP, ADP or GTP)
     140716020 (lig1)
DNA replication proteins [BR:haka03032]
 Eukaryotic type
  DNA Replication Elongation Factors
   Other elongation factors
    140716020 (lig1)
 Prokaryotic type
   Elongation factors (archaeal)
    Other elongation factors
     140716020 (lig1)
DNA repair and recombination proteins [BR:haka03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    Long Patch-BER factors
     140716020 (lig1)
   NER (nucleotide excision repair)
    Other NER factors
     140716020 (lig1)
   MMR (mismatch excision repair)
    Other MMR factors
     140716020 (lig1)
SSDB
Motif
Pfam: DNA_ligase_A_M DNA_ligase_A_N DNA_ligase_A_C RNA_ligase
Other DBs
NCBI-GeneID: 140716020
NCBI-ProteinID: XP_072884771
LinkDB
Position
24:complement(38042463..38103019)
AA seq 980 aa
MQRSIASFFQPLKGEGQVKKCQEDPTEGRRPTSPLKPRTTLTEEEGSVSPVKPRGRRVGR
VLESEDEEDAVSGSEEEEVPEPADVPLDERKSLAPEAGEPPGHTAASPPPASALPADDSP
VDAGLTTHHGFPRRRTARKQLPKRKLDVRRQVNGDTESQEEEEEKSAKRQRLEAGEADDK
ISEMETEVMEETQGDREQDLKQNIETTECGEMCGDSRYGEGVRIGVEPQDAEPESAASDS
SKEAGATPEESASSGSNIKGHEKEGKSKQLINSFFAPRKACSKAQTELKKDASENGNTDD
KSLQTSKKTSTNSFFSKSKERAEPSVPQMYNPGKSHYHPITDACWSQGQRVPYLAVAQTF
EKIEAETARLKNIEMLSNLLRSVIALTPDDLLSCVYLCLNQLGPAYEGLELGVGDTILMK
AVAQATGRQLERVKQEAQEKGDLGLVAESSRSTQRTMFTPAPLTIHTVCSRLRDIAHMGG
TASMQKKIEVIKGLLVACRHSEARYLIRSLGGKLRIGLAEQSVVAALAQAVCLTPPGQDV
LDAGRGMAAETRKAWIEEKSLLLKQTYCELPNYDLIIPVLLKEGIDQLPQHCRLTPGIPL
KPMLAHPTRGIAEVLRRFDTAPFVCEYKYDGERAQIHLLESGEIRIYSRNQENNTSKYPD
IISRMEQVRKPEVRSCVLDTEAVAWDRNRKQIQPFQVLTTRKRKDVDAASITVQVCVYAF
DLLYLNGESLVKEPYSRRRELLRTSFKEVEGEFVFAQSLVTSDTEDIADFLEHSLRDSCE
GLMVKTLDVDATYEIAKRSHNWLKLKKDYLDGVGDSLDLVVIGGFHGRGKRTGVYGGFLL
ACFHEEDEEFQTICKIGTGFSDEELEQHAKFFRDHVIETPRPYYRWDASVEPDDWFDPVQ
LWEVKCADLSISPVYRAALGMVDEEKGISLRFPRFLRIREDKKSEEATTSSQVAELYRKQ
QQIQNQQVSDEMGGGANDSD
NT seq 2943 nt   +upstreamnt  +downstreamnt
atgcaacggagtattgcatcgttctttcagcccctgaagggagagggacaggtcaaaaaa
tgtcaggaagatcccacagaagggcgacggcccacgtccccgctgaagcctcggaccacc
ctgaccgaggaggaggggtcggtgtctccggtgaagccccgcggccgcagggtcggccgg
gttctggagagcgaggatgaggaggatgcagtgagtgggagcgaagaggaggaagtgcca
gagccagctgatgtccccttggatgaaaggaagtccttggcaccagaggcaggagagcct
cctggacacacagcagcctctcccccaccagcttctgctctgccagcggacgacagccca
gtggacgctggcctgacgactcaccacggcttcccgcgccggcgtacagcccgtaagcag
ctgcctaagcggaagcttgatgtgaggagacaggttaacggtgataccgagagtcaggag
gaagaggaggagaaatcggcaaagcggcaacgtctggaagcaggtgaagcagatgacaag
atttctgagatggagacagaggtcatggaggagacccagggcgacagggaacaagatctt
aaacagaatattgaaacaactgagtgtggggagatgtgtggagactccaggtatggtgaa
ggtgtcaggattggagtggagccgcaggatgcggaaccagaatccgcagcctcagacagt
tcgaaggaagcaggcgcaacaccagaggagtccgcgagcagcggatcaaatataaaaggg
catgaaaaggaggggaaaagcaaacaattgatcaacagcttcttcgctcccagaaaagcc
tgttccaaagcccagacagagttgaagaaagacgcatcagagaatggtaacacagatgac
aagtccctccaaacctccaaaaagacaagcaccaacagtttcttctcaaaatccaaagag
agagcggagcccagtgtaccacagatgtacaatccaggaaaatctcactaccatcccatt
acagatgcctgctggagtcagggacagagggttccgtatctggctgtagcgcaaaccttt
gagaagatcgaggcagagacggctcggctgaagaacatcgagatgttgagtaacctgctg
cgatcagtgattgcactgacccctgacgacctgctttcctgtgtctacctgtgtctgaac
cagctgggacctgcctacgagggactggagctgggggtgggagacaccatcctgatgaaa
gcagtggcccaggccacaggtcgccagctggaacgggtgaagcaggaggcgcaggagaag
ggagacctggggctggtggcagagagcagccgtagcacccagagaaccatgttcacccca
gcacccctcaccatccacaccgtctgcagccggctgagggacattgcccatatggggggc
actgcctcaatgcagaagaagatcgaagtgatcaagggtttgctggtggcctgtcgtcac
tcggaggctcgatacttgatccggtctctcggagggaagctccgtatcggtctggcagag
cagtcggtggtggcagcccttgcccaggctgtgtgcctgacccctcccgggcaggacgtg
ttggacgctgggaggggaatggcagcggagacccgcaaggcctggatcgaggagaagagc
ctcctcctcaagcagacatactgtgagctgccgaactacgacctgatcatcccggttcta
ctgaaggagggaattgaccagttaccccagcattgccgtctcacaccaggaatccccctg
aagcccatgctggctcaccccacccggggcattgctgaggttctgcgacgttttgacacg
gcccccttcgtctgtgagtacaagtacgacggagagcgagcacagattcacctgctcgag
tcgggggagatccgaatctacagccgaaaccaggagaacaacacgagtaaataccctgat
atcatcagccgtatggagcaggtgaggaaacccgaggtccgatcctgtgttcttgacact
gaggctgtcgcatgggaccgtaacaggaagcaaatccaacccttccaggtgctcaccaca
cgcaagcggaaggatgttgacgcagccagcattactgtccaggtctgtgtttatgccttc
gatctgctctacctgaacggggagtcgctggtgaaggaaccatattcgaggcggcgggag
ctgctgagaacctcgttcaaggaggtggagggggagtttgtctttgctcagtccctggtc
accagtgacaccgaagacatcgcagactttcttgagcactcactacgagattcgtgcgag
gggttgatggtgaagacgctggatgtagacgccacctacgagatcgccaagcgctcccac
aattggctaaagctgaagaaggattacctggacggtgtgggggactctctggacctggtg
gtgatcggtggttttcatggccgagggaagcggacaggggtttatggtggcttcctcctc
gcttgtttccacgaggaagacgaggagttccagaccatctgtaagatcggcacggggttc
tcggacgaggagctcgaacaacacgccaagtttttcagggaccacgtgatcgaaacgcca
cggccctattaccgatgggacgcatccgtggagcccgatgactggtttgatccagtgcag
ttgtgggaagtgaagtgtgcggatctgtcgatctctcctgtctaccgagcagccctgggg
atggtggatgaggagaaaggcatttcactgcgatttcctcgcttcctgaggattagggag
gacaaaaaatcagaggaggcgaccaccagcagccaggttgccgaactctaccggaaacag
cagcagattcagaaccagcaggtgtcagatgagatgggcggtggggccaacgattctgac
tga

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