Hemitrygon akajei (red stingray): 140716020
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Entry
140716020 CDS
T11019
Symbol
lig1
Name
(RefSeq) DNA ligase 1 isoform X1
KO
K10747
DNA ligase 1 [EC:
6.5.1.1
6.5.1.6
6.5.1.7
]
Organism
haka Hemitrygon akajei (red stingray)
Pathway
haka03030
DNA replication
haka03410
Base excision repair
haka03420
Nucleotide excision repair
haka03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
haka00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
140716020 (lig1)
03410 Base excision repair
140716020 (lig1)
03420 Nucleotide excision repair
140716020 (lig1)
03430 Mismatch repair
140716020 (lig1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
haka03032
]
140716020 (lig1)
03400 DNA repair and recombination proteins [BR:
haka03400
]
140716020 (lig1)
Enzymes [BR:
haka01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
140716020 (lig1)
6.5.1.6 DNA ligase (ATP or NAD+)
140716020 (lig1)
6.5.1.7 DNA ligase (ATP, ADP or GTP)
140716020 (lig1)
DNA replication proteins [BR:
haka03032
]
Eukaryotic type
DNA Replication Elongation Factors
Other elongation factors
140716020 (lig1)
Prokaryotic type
Elongation factors (archaeal)
Other elongation factors
140716020 (lig1)
DNA repair and recombination proteins [BR:
haka03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
Long Patch-BER factors
140716020 (lig1)
NER (nucleotide excision repair)
Other NER factors
140716020 (lig1)
MMR (mismatch excision repair)
Other MMR factors
140716020 (lig1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
DNA_ligase_A_C
Motif
Other DBs
NCBI-GeneID:
140716020
NCBI-ProteinID:
XP_072884771
LinkDB
All DBs
Position
24:complement(38042463..38103019)
Genome browser
AA seq
980 aa
AA seq
DB search
MQRSIASFFQPLKGEGQVKKCQEDPTEGRRPTSPLKPRTTLTEEEGSVSPVKPRGRRVGR
VLESEDEEDAVSGSEEEEVPEPADVPLDERKSLAPEAGEPPGHTAASPPPASALPADDSP
VDAGLTTHHGFPRRRTARKQLPKRKLDVRRQVNGDTESQEEEEEKSAKRQRLEAGEADDK
ISEMETEVMEETQGDREQDLKQNIETTECGEMCGDSRYGEGVRIGVEPQDAEPESAASDS
SKEAGATPEESASSGSNIKGHEKEGKSKQLINSFFAPRKACSKAQTELKKDASENGNTDD
KSLQTSKKTSTNSFFSKSKERAEPSVPQMYNPGKSHYHPITDACWSQGQRVPYLAVAQTF
EKIEAETARLKNIEMLSNLLRSVIALTPDDLLSCVYLCLNQLGPAYEGLELGVGDTILMK
AVAQATGRQLERVKQEAQEKGDLGLVAESSRSTQRTMFTPAPLTIHTVCSRLRDIAHMGG
TASMQKKIEVIKGLLVACRHSEARYLIRSLGGKLRIGLAEQSVVAALAQAVCLTPPGQDV
LDAGRGMAAETRKAWIEEKSLLLKQTYCELPNYDLIIPVLLKEGIDQLPQHCRLTPGIPL
KPMLAHPTRGIAEVLRRFDTAPFVCEYKYDGERAQIHLLESGEIRIYSRNQENNTSKYPD
IISRMEQVRKPEVRSCVLDTEAVAWDRNRKQIQPFQVLTTRKRKDVDAASITVQVCVYAF
DLLYLNGESLVKEPYSRRRELLRTSFKEVEGEFVFAQSLVTSDTEDIADFLEHSLRDSCE
GLMVKTLDVDATYEIAKRSHNWLKLKKDYLDGVGDSLDLVVIGGFHGRGKRTGVYGGFLL
ACFHEEDEEFQTICKIGTGFSDEELEQHAKFFRDHVIETPRPYYRWDASVEPDDWFDPVQ
LWEVKCADLSISPVYRAALGMVDEEKGISLRFPRFLRIREDKKSEEATTSSQVAELYRKQ
QQIQNQQVSDEMGGGANDSD
NT seq
2943 nt
NT seq
+upstream
nt +downstream
nt
atgcaacggagtattgcatcgttctttcagcccctgaagggagagggacaggtcaaaaaa
tgtcaggaagatcccacagaagggcgacggcccacgtccccgctgaagcctcggaccacc
ctgaccgaggaggaggggtcggtgtctccggtgaagccccgcggccgcagggtcggccgg
gttctggagagcgaggatgaggaggatgcagtgagtgggagcgaagaggaggaagtgcca
gagccagctgatgtccccttggatgaaaggaagtccttggcaccagaggcaggagagcct
cctggacacacagcagcctctcccccaccagcttctgctctgccagcggacgacagccca
gtggacgctggcctgacgactcaccacggcttcccgcgccggcgtacagcccgtaagcag
ctgcctaagcggaagcttgatgtgaggagacaggttaacggtgataccgagagtcaggag
gaagaggaggagaaatcggcaaagcggcaacgtctggaagcaggtgaagcagatgacaag
atttctgagatggagacagaggtcatggaggagacccagggcgacagggaacaagatctt
aaacagaatattgaaacaactgagtgtggggagatgtgtggagactccaggtatggtgaa
ggtgtcaggattggagtggagccgcaggatgcggaaccagaatccgcagcctcagacagt
tcgaaggaagcaggcgcaacaccagaggagtccgcgagcagcggatcaaatataaaaggg
catgaaaaggaggggaaaagcaaacaattgatcaacagcttcttcgctcccagaaaagcc
tgttccaaagcccagacagagttgaagaaagacgcatcagagaatggtaacacagatgac
aagtccctccaaacctccaaaaagacaagcaccaacagtttcttctcaaaatccaaagag
agagcggagcccagtgtaccacagatgtacaatccaggaaaatctcactaccatcccatt
acagatgcctgctggagtcagggacagagggttccgtatctggctgtagcgcaaaccttt
gagaagatcgaggcagagacggctcggctgaagaacatcgagatgttgagtaacctgctg
cgatcagtgattgcactgacccctgacgacctgctttcctgtgtctacctgtgtctgaac
cagctgggacctgcctacgagggactggagctgggggtgggagacaccatcctgatgaaa
gcagtggcccaggccacaggtcgccagctggaacgggtgaagcaggaggcgcaggagaag
ggagacctggggctggtggcagagagcagccgtagcacccagagaaccatgttcacccca
gcacccctcaccatccacaccgtctgcagccggctgagggacattgcccatatggggggc
actgcctcaatgcagaagaagatcgaagtgatcaagggtttgctggtggcctgtcgtcac
tcggaggctcgatacttgatccggtctctcggagggaagctccgtatcggtctggcagag
cagtcggtggtggcagcccttgcccaggctgtgtgcctgacccctcccgggcaggacgtg
ttggacgctgggaggggaatggcagcggagacccgcaaggcctggatcgaggagaagagc
ctcctcctcaagcagacatactgtgagctgccgaactacgacctgatcatcccggttcta
ctgaaggagggaattgaccagttaccccagcattgccgtctcacaccaggaatccccctg
aagcccatgctggctcaccccacccggggcattgctgaggttctgcgacgttttgacacg
gcccccttcgtctgtgagtacaagtacgacggagagcgagcacagattcacctgctcgag
tcgggggagatccgaatctacagccgaaaccaggagaacaacacgagtaaataccctgat
atcatcagccgtatggagcaggtgaggaaacccgaggtccgatcctgtgttcttgacact
gaggctgtcgcatgggaccgtaacaggaagcaaatccaacccttccaggtgctcaccaca
cgcaagcggaaggatgttgacgcagccagcattactgtccaggtctgtgtttatgccttc
gatctgctctacctgaacggggagtcgctggtgaaggaaccatattcgaggcggcgggag
ctgctgagaacctcgttcaaggaggtggagggggagtttgtctttgctcagtccctggtc
accagtgacaccgaagacatcgcagactttcttgagcactcactacgagattcgtgcgag
gggttgatggtgaagacgctggatgtagacgccacctacgagatcgccaagcgctcccac
aattggctaaagctgaagaaggattacctggacggtgtgggggactctctggacctggtg
gtgatcggtggttttcatggccgagggaagcggacaggggtttatggtggcttcctcctc
gcttgtttccacgaggaagacgaggagttccagaccatctgtaagatcggcacggggttc
tcggacgaggagctcgaacaacacgccaagtttttcagggaccacgtgatcgaaacgcca
cggccctattaccgatgggacgcatccgtggagcccgatgactggtttgatccagtgcag
ttgtgggaagtgaagtgtgcggatctgtcgatctctcctgtctaccgagcagccctgggg
atggtggatgaggagaaaggcatttcactgcgatttcctcgcttcctgaggattagggag
gacaaaaaatcagaggaggcgaccaccagcagccaggttgccgaactctaccggaaacag
cagcagattcagaaccagcaggtgtcagatgagatgggcggtggggccaacgattctgac
tga
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