Hemitrygon akajei (red stingray): 140717649
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Entry
140717649 CDS
T11019
Name
(RefSeq) pre-mRNA-processing factor 39-like
KO
K13217
pre-mRNA-processing factor 39
Organism
haka Hemitrygon akajei (red stingray)
Brite
Spliceosome [BR:
haka03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
Other SAPs
140717649
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HAT_PRP39_N
HAT_PRP39_C
Suf
TPR_14
HAT_Syf1_CNRKL1_N
HAT_Syf1_CNRKL1_C
TPR_19
TPR_16
TPR_12
TPR_15
Mad3_BUB1_I
HrpB1_HrpK
TPR_MalT
ARM_TT21_2nd
ARM_TT21
ARM_TT21_5th
Motif
Other DBs
NCBI-GeneID:
140717649
NCBI-ProteinID:
XP_072887363
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All DBs
Position
28:7280796..7331898
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AA seq
883 aa
AA seq
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MAAAADRWPEPEPNPLASAAAGDAEQLLLNKESLNGNRPFISYARTPSLGTAGSPTPQGA
SALEDSEARLGGGGTGEDLPAGASDAHSTEATATGSPGPPNGDAAADDRLGSGEFSEPAA
GDARLRDSQEPGENGLGPRVGASAAEPAGGSSDPSDGVPGGRSPAPCNGSGADEESTADH
HGHPGLVTDLIATQDPAQAYRQGAVMEVDTDVPGVGESTALWGTMADLSAGTYDPPLPDG
QAAGAHFADGLELAADPDGLAHYQPAGGDYEAAESGDGVPPYPADFEKYWKIVEDNPYDF
TGWTYVLQYVEQENHIWAVRRTFDSFFTRYPYCYGYWKKYADIEKRLGFTKEAEEVYQRG
LQSIPLSVDLWVHYITFLQEILEPASPDTSVKLRSVFEMALAAAGTDFRSDRLWDLYVTW
EKEQGNLKAVTAIYDRLLSIPTQLYSHHFEKFKEHVQSYSPKDILSTDEFLRLRSEVVTS
LAAAEGDSDEGPPGDDPPPGVGTTDQEKADTEMGRIRAHLEATRQEMYLLNEEEVSKRWH
FEEAIKRPYFHVKPLERVQLKNWRDYLDFEIASGTNERVLVLFERCVIACALYEDFWIKY
AKYLENHSVEAVRNVFQRACMVHLPKKPTLHLLWAAFEEQQGEFKEAQRILRSFQAVMPG
LAMVLLRRVSLERRCGNTDEAEALLREAIEQHQDTPLASFFAIKLSRQLLKVQRNLAKAR
KVLLEAIDRDKDNVKLYLNLLELEFSCDVRANESNILGCFDQVLAGSLPLEIKIVFSQRR
VEFLEDFGSSVRSLLQAYDEHQKLLKQNASKKRAAENGTEEPDEKRARAEDGTPVVAATS
AAALTSGDAVGSQAAYSYSAWYQPYASYGYQSPWNYNQYYPHS
NT seq
2652 nt
NT seq
+upstream
nt +downstream
nt
atggcggcggccgctgatcggtggccggagccggagccgaatccgctggcatcggctgct
gcgggcgacgccgaacagctgttgctgaacaaggaaagcctgaacgggaatcgtcctttc
atctcatacgcccggactccaagcctcgggacggctggctctcccacccctcagggagcg
agtgcgctcgaggactccgaggcccggctgggcggcggagggaccggcgaggacttgccc
gccggtgccagtgacgcgcacagcactgaggcgacggcgaccggcagtcctggcccgccc
aacggtgatgccgcggcggacgacaggctgggcagcggggaattcagcgagccggcggcc
ggagatgcccgtctccgtgactctcaggagccgggggagaacggtcttggccctcgagtt
ggggccagtgccgcagagccagcgggagggagctcggacccgagcgacggggtcccgggg
ggccgcagtcctgctccgtgcaacggcagcggggctgatgaagagtcgactgctgaccat
cacggacaccctggccttgttactgatctgattgccacgcaggacccggctcaagcgtac
cggcagggcgctgtgatggaagtggacacggacgtgcccggcgttggagagtccacggct
ctgtggggcaccatggcggacttgtccgccggcacttatgacccgccgctgcccgacggg
caggccgctggcgcccactttgccgatgggctggagctggcggcggatcccgacgggctg
gcacactaccagccggctggcggcgactacgaggcggcggagtccggcgacggcgtcccg
ccctacccggccgacttcgagaagtactggaagatcgtggaggacaacccgtacgacttc
acgggctggacgtacgtgctccagtacgtggaacaggagaatcacatttgggctgtccgg
aggacgttcgactcgttcttcacccgctacccctactgttacggctactggaagaagtac
gctgatattgagaagagactggggttcaccaaagaggcagaggaggtttatcagcgaggg
ttgcagtccatcccgctcagcgtggatctgtgggtccactacatcactttcctgcaggaa
atcctggagcccgccagccccgatacctcagtgaagctccgcagcgtgtttgaaatggcg
ctggctgcagccggcacggatttccgctccgaccgcctctgggacctgtacgtgacctgg
gagaaggagcaggggaacctgaaggctgtgaccgccatctacgaccggctgctgtccata
cccacccagctgtacagccaccactttgagaagttcaaggagcacgtgcagagctattct
cccaaggacatcctgtccaccgacgagttcctcaggctgaggtcggaggtcgtgaccagc
ctcgccgcagccgaaggggattccgacgagggtccacccggcgacgaccctccgcctggc
gttggcaccacagaccaagagaaggccgacaccgagatggggagaatcagagcccacctg
gaggccactcggcaagagatgtacctcctgaacgaggaggaggtcagcaagaggtggcac
ttcgaggaggcgatcaaacgcccttacttccacgtgaagcccctggagagggtgcagctg
aagaactggagggactacctggacttcgagatcgccagcggcaccaacgagcgagtactg
gtactattcgagcgctgcgtgatcgcctgtgctctgtacgaggacttctggatcaagtac
gccaagtacctggagaaccacagcgtggaggccgtccgcaacgtcttccagagggcctgc
atggtccacctgcccaagaagcccaccctccacctgctgtgggctgccttcgaggagcag
caaggtgagttcaaggaggcgcagcggatcctgcggtccttccaggcggtgatgccaggc
ctggccatggtcctcctccggcgggtgagcctggagcggcgctgcggcaacaccgacgag
gcggaggccctgctgcgcgaggccatcgagcagcaccaggacacgccgctggcctccttc
ttcgccatcaagctctcgcggcagctcctgaaggtgcagcggaacctggccaaggcgagg
aaggtgctcctggaggccatcgacagggacaaggacaacgtgaagctctacctcaaccta
ctggaactggaattcagctgtgacgtccgtgccaacgagagcaacatcctgggctgcttc
gaccaggtgctggccggttccctcccgctagaaatcaagatcgtcttctcccagcggagg
gtggagttcctcgaggacttcggctccagcgtgcgcagcctgctccaagcctacgacgaa
caccagaagctcctcaagcagaacgctagcaagaagcgggcagcggagaacggcacggaa
gagccggacgagaagcgggcgcgggcggaggacggtacgcccgtggtggccgccaccagt
gctgccgccctgaccagcggagacgccgtcggcagccaggcagcgtacagctacagcgcg
tggtaccagccctacgcatcttacggctaccagagcccgtggaactataatcagtactac
ccacacagctga
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