Hemitrygon akajei (red stingray): 140718387
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Entry
140718387 CDS
T11019
Symbol
chd5
Name
(RefSeq) chromodomain-helicase-DNA-binding protein 5 isoform X1
KO
K14435
chromodomain-helicase-DNA-binding protein 5 [EC:5.6.2.-]
Organism
haka Hemitrygon akajei (red stingray)
Brite
KEGG Orthology (KO) [BR:
haka00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
haka03036
]
140718387 (chd5)
Chromosome and associated proteins [BR:
haka03036
]
Eukaryotic type
Chromatin remodeling factors
Other chromatin remodeling factors
140718387 (chd5)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
CHDCT2
CHDII_SANT-like
Helicase_C
CHDNT
DUF1087
PHD
Chromo
ResIII
PHD-1st_NSD
HDA2-3
PHDvar_NSD
HTH_CHD1_Hrp3
DEAD
PHD_2
AAA_22
Motif
Other DBs
NCBI-GeneID:
140718387
NCBI-ProteinID:
XP_072888157
LinkDB
All DBs
Position
29:complement(29100598..29197091)
Genome browser
AA seq
1892 aa
AA seq
DB search
MMPASFGNEEDGMENDEGAPGLNGIVSPAPLMDMSCLKDDYRAEEEEEEEEEEESREPMF
PEEEPAKVKKKRKPRKQKENKTPKMKKRKKEEQKSSTYLMDDWGLEDVDYEFTEEDYHTL
TNYKTFSQFLRPLIAKKNPKIPMSKMMTVLGAKWREFSANNPFKGTSVAAAEVAAAAVAA
AVEQVIVAPSVPIQVPPPVQPPVPLRKAKTKEGKGPGVRKKSRSARAAELKKKGKGKKMV
SLKIKLGGFSGKRKKESSSDEDDHGESDLDSASVHSCSVRSEGSAGLGKRRRKGGKRKKK
LEEGDGYETDHQDYCEVCQQGGEIILCDTCPRAYHLVCLDPEMEKAPEGKWSCLHCEKEG
IQWEAKEDEEDEDEEEGVDEEDDDHMEFCRVCKDGGELLCCDSCPSSYHIHCLNPPLPEI
PNGEWICPRCLCTPLKGKVQRILHWTWGSPPPPRTPSGLADGATDTERPKPLEGRPEREF
FVKWVGRSYWHCSWATELQLELYHTVMFRNFQRKNDMDEPPPFDYGSGDDEKSEKRKNKD
PQSMAMEKRFYRYGIKPEWLIIQRIINHSFDKKGDLHYLIKWRDLPYDQATWEHEDFDIP
DYDTMKEMYWNHRQLIMGEDIRPVRKLNKKGQKARELVFDPPPCQPVVDPTVKFDKQPDY
IDATGGNLHPYQLEGLNWLRFSWAQGTDTILADEMGLGKTVQTIVFLYSLFREGHSKGPF
LVSAPLSTIINWEREFMMWAPSFYVVTYTGDKDCRAVIRENEFCFDENVFKNGKKTFRMK
SEAQIKFHVLLTSYEMITIDQTILGSIDWACLVVDEAHRLKNNQSKYFRVLNSYKIDYKL
LLTGTPLQNNLEELFHLLNFLTPLRFNNLEGFLEEFADISKEDQIKKLHDLLGPHMLRRL
KTDVFKNMPSKTELIVRVELSSMQKKYYKFILTKNFEALNSKGGGNQVSLLNIMMDLKKC
CNHPYLFPVAAVEAPVLPNGSYDGNSLVKSSGKLILLQKMLRKLHSQGHRVLIFSQMTKM
LDLLEDFLEYDGYKYERIDGSITGNQRQEAIDRFNAPGAQQFCFLLSTRAGGLGINLATA
DTVVIYDSDWNPHNDIQAFSRAHRIGQNKKVMIYRFVTRASVEERITQVAKKKMMLTHLV
VRPGLGSKSGSMSKQELDDILKFGTEELFKDDEAEKEAEEMRMIHYDDSAISKLLDRNQN
ATDDADIQNMNEYLSSFKVAQYVVREEDEQEEVEREIIKQEENVDPDYWEKLLRHHYEQQ
QEDLARNLGKGKRIRKQVNYNDASQEDQEWQDDLSDNQSEYSVGSEDEDEDFEEKLEAGR
RQSRRQLKNERDKPLPPLLARVGGNIEVLGFNARQRKAFVNAIMRWGMPPQDAFNSHWLV
RDLRGKSEKEFRAYVSLFMRHLCEPGADGSETFADGVPREGLSRQHVLTRIGVMSLVRKK
VQEFEYINGRYSTPEMVPENMESKKPIDCPSSDASTPVAASPACPLPGVPAHSSTEKNGC
CAEVMDDNEREKEECEIPGGVKAAPGSEKPQELDCKKQGGDGGAEEKGGHEPLEQTAPPH
PKAEEANEDKDVAESLQNGEIVKEMKEEESRKEQAGKGKFMFNIADGGFTELHTLWQNEE
RAAVSSGKIYDIWHRRHDYWLLAGIVAHGYARWQDIQNDPRYTIINEPFKAEMNKGNFLE
MKNKFLARRFKLLEQALVIEEQLRRAAYLNMTQDPNHPAMALNARFAEVECLAESHQHLS
KESLAGNKPANAVLHKVLNQLEELLSDMKADVTRLPNMLSRVPPVAARLQMSERSILSRL
ANRGTEPQQQPFPQGQYGAAQMYSNSFGPTFRGPGAGALINYNQMPLGPYISATTNISAV
SVPDKKHLSEGLKEMEAGERKEKVSDVICIED
NT seq
5679 nt
NT seq
+upstream
nt +downstream
nt
atgatgccggcatcttttggcaatgaggaggacgggatggaaaacgatgagggagcccca
ggattaaatggaattgtgagtcctgcccctctcatggacatgagctgcctcaaagatgac
tatcgggcagaggaagaggaggaggaggaggaggaagaggaaagtcgtgaaccaatgttc
ccagaagaagaaccagccaaagtgaagaaaaaaaggaaaccaaggaaacagaaagagaac
aagactccaaaaatgaagaagaggaagaaggaggaacagaagtcctccacatacttaatg
gacgactggggtttggaagatgtggattatgagttcacagaggaggattaccacaccttg
accaactataaaaccttcagccagttcctgaggccactcattgccaagaaaaatccaaaa
atccccatgtcaaaaatgatgacagtgcttggtgcaaaatggcgggagttcagtgccaat
aaccctttcaaggggacctcggtggctgcagcagaggtggcagcagctgcggtggcggct
gcggtggaacaggtgatcgtggctccatctgtgccgatccaggtgccgccccctgtacag
cctccggtccctctaaggaaagccaagaccaaagaaggaaaaggcccaggggtccgaaag
aaaagtagaagtgctcgagctgctgaattaaagaagaaaggaaaagggaagaagatggta
tccctgaaaatcaaattgggaggatttagcggcaaacggaaaaaggaatcttcgagcgat
gaagatgaccacggcgaatccgatctggacagtgccagcgtccacagctgctccgtgcga
tccgagggctcagctggtttgggcaagaggaggaggaaaggtggcaagagaaaaaagaag
ttggaggaaggtgacggctacgagacagaccaccaggactactgtgaagtttgccagcaa
ggaggggaaattatcttgtgtgatacctgtccgagggcctatcatttagtctgcttggac
cccgagatggagaaggccccagaagggaagtggagttgtctgcactgtgaaaaggaagga
atccagtgggaggccaaagaggatgaagaggatgaggatgaagaggagggcgtggatgaa
gaagatgatgatcacatggaattctgccgcgtctgcaaggacgggggcgagctgctgtgt
tgcgactcttgcccttcctcttatcacattcactgccttaaccccccactgcccgagatc
ccgaacggggagtggatttgtcctcggtgcctgtgcactcccctgaaagggaaggttcag
cggatcttgcactggacgtggggctctcccccgccaccacgcactccttcaggcctggca
gacggagccactgacacggagcgccccaagcccctggaagggcggccggagcgagagttc
ttcgtgaaatgggtgggccgatcgtactggcactgctcgtgggccacagagctgcagcta
gagctgtaccacacggtgatgttccggaacttccaaaggaagaacgacatggacgagccg
ccaccgttcgactacggctccggagatgacgagaagagcgagaagcggaagaataaagat
ccgcagagcatggcgatggagaagcggttctatcggtacggcatcaaacctgagtggctg
atcatccagcgaatcataaatcacagctttgataagaaaggtgatttacattatctgatt
aaatggagggatttgccatatgatcaggcgacctgggaacatgaagattttgacattccg
gattacgacaccatgaaggagatgtactggaaccacaggcagttgattatgggtgaagac
atacggccagtgaggaagctgaacaagaaaggacagaaagctcgggagttggtctttgac
ccacccccatgccagcctgttgtggacccgactgtgaagtttgacaagcagccggattac
attgacgctaccggaggcaacttgcacccttaccagctggaggggctgaattggctgcgc
ttctcctgggcacagggcacagacaccatcctggccgatgaaatgggactggggaaaacg
gttcagaccattgtgtttctgtactcgctcttcagagagggacactccaagggacctttc
ctggtgagtgccccgctgtcaacgattattaattgggagcgggagttcatgatgtgggca
ccgtccttctacgtggtaacgtacactggagacaaagactgtcgagctgtaatccgtgag
aatgagttctgctttgatgagaatgttttcaagaacgggaaaaagaccttcaggatgaag
agtgaagcacaaataaagtttcatgtcctgctcacatcgtacgagatgatcaccattgac
cagacaattctcggatccattgactgggcttgccttgtggttgatgaagctcacaggctg
aaaaataaccagtccaaatatttcagggtgctaaattcatataaaatcgattacaagctg
ctgttgacgggaacaccactgcagaataacctggaggagcttttccacctgctgaacttc
ctcactcctctgcgtttcaacaacctggagggattcttggaagagtttgcagacatctcg
aaagaggatcagatcaagaagcttcacgacctgctgggtccacacatgctgcggcgtctc
aagaccgacgtctttaagaacatgccgtccaagaccgagctgattgtccgcgtggagctc
agttccatgcagaagaagtattacaagttcattttgaccaaaaactttgaggctctgaat
tcgaaaggcggcgggaaccaggtatcgctactgaacatcatgatggatctgaagaaatgc
tgcaaccatccctatttgtttccggtggctgcggtggaagccccagtgttgccgaatgga
tcgtatgatgggaattcactggtgaagtcctctggaaagctgatactcctgcaaaagatg
ttgaggaagctgcacagccagggccaccgggtcctgatcttctcccagatgactaaaatg
ctggatctgttggaggatttcttggagtacgatgggtataaatacgagcggatagatggg
agcatcactggcaatcagcggcaggaggctatcgaccggttcaatgcccctggagcccag
cagttctgtttcctcctgtccactcgagccggaggtctgggaattaacttggccacagcg
gacaccgttgtaatttacgattcagactggaacccccacaacgacattcaggcgttcagc
agggctcatcgcatcggccagaacaaaaaggtgatgatctatcgtttcgtgacccgggct
tcggtggaagaacgcatcacgcaggtggccaagaagaagatgatgctgactcacctggtg
gtgcggccgggattggggtccaagtctggctcgatgtccaagcaggagctggatgacatc
ctcaagtttggcacagaggagctcttcaaggatgatgaagctgagaaggaagctgaggag
atgcggatgatccactacgacgacagtgccatctccaagctactcgatcgcaatcagaac
gcaacggacgatgccgacattcagaatatgaacgagtacctcagttccttcaaagtagcc
cagtacgtggtgcgggaagaagacgaacaggaggaggttgaaagggagatcatcaaacag
gaagagaatgtggaccctgattattgggagaaacttcttaggcatcactatgagcagcaa
caggaggatctcgccaggaatctgggcaaaggcaagcgcattcgcaagcaagtcaactac
aacgatgcctcccaggaggaccaagagtggcaggatgacctatcagacaaccagtccgag
tactccgtgggctcagaggacgaggatgaagactttgaagagaagctggaagctgggaga
cgacaatcacggaggcaacttaagaatgaaagggacaaacctctcccgcccttactagct
cgagttggtgggaatattgaggttctaggattcaacgctcgccagcggaaagcctttgtc
aatgccatcatgcgctggggaatgccaccacaggatgctttcaactcacactggctggtg
cgagatctccgggggaagagtgagaaggagtttcgagcctacgtctcactgtttatgaga
cacttgtgtgaaccgggtgcagacggatccgagacctttgcagacggtgtgccccgtgag
gggttgtcccggcaacatgtgctcaccaggataggtgtgatgtcgctggtcaggaagaag
gtgcaggagtttgaatacatcaacgggaggtacagcacgccggagatggtgcccgagaac
atggagagcaagaagcccattgactgcccgtcgtctgatgccagcacccctgttgctgcc
agccctgcctgcccgctgcctggggtaccagctcacagctccaccgagaagaatggctgc
tgtgcggaagtgatggatgacaacgagagggaaaaggaggagtgtgagattcccggcggg
gtgaaggcagctcccggcagtgagaagcctcaggaattggactgcaagaagcaagggggc
gatggcggagctgaggagaaaggggggcacgaaccgctggagcagactgcaccccctcac
cccaaagctgaagaggccaacgaggacaaagacgttgcagaaagcctgcagaatggtgag
atagtgaaagagatgaaggaggaagagagcagaaaggagcaggctggcaaaggaaaattt
atgttcaatatcgcggatggaggtttcacagagttgcacacgctgtggcagaatgaagaa
cgagctgctgtttcttccggaaaaatctacgacatctggcacaggaggcacgactactgg
ctgctggctggcattgttgctcacggctatgctcgatggcaagacatccaaaacgatccc
aggtacaccatcatcaacgaacctttcaaggcggagatgaacaaggggaatttcctggaa
atgaagaacaagttcctggccaggaggttcaagctcctggagcaggctctggtgatcgaa
gagcagctgcggagagccgcttacctcaacatgacccaggaccccaaccatcctgccatg
gctctcaacgcccgcttcgccgaggttgaatgtttagccgagagccaccagcatctctcc
aaggagtctctggccggtaacaagcccgccaatgcagttctgcacaaagtcctgaaccag
ctggaggagctcctgagcgacatgaaggccgatgtgacgaggctacccaacatgttgtcg
cgggtcccgcccgtcgcggcccggctccagatgtcggagcgaagtatcctgagtcgactt
gccaaccggggcaccgagccccagcagcagcccttcccgcagggtcagtatggagcggcg
cagatgtatagtaacagctttgggcccaccttccgagggccaggggccggagccctcatc
aactacaaccagatgccactgggcccctacatcagcgcgaccacaaacatttctgctgtg
agtgtcccggataaaaagcacttgtcggaaggactgaaggaaatggaagcaggggaaagg
aaagagaaagtcagtgatgtgatctgcattgaagattga
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