Hemitrygon akajei (red stingray): 140718450
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Entry
140718450 CDS
T11019
Symbol
clstn1
Name
(RefSeq) calsyntenin-1 isoform X1
KO
K22659
calsyntenin 1
Organism
haka Hemitrygon akajei (red stingray)
Brite
KEGG Orthology (KO) [BR:
haka00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
haka04515
]
140718450 (clstn1)
Cell adhesion molecules [BR:
haka04515
]
Cadherins
Cadherin related
140718450 (clstn1)
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CLSTN_C
Cadherin
Laminin_G_3
CDC45
Laminin_G_2
Toxin_R_bind_N
SID-1_RNA_chan
V_ATPase_I
PFF1_TM
Cadherin_C_2
PRIMA1
EphA2_TM
TMEM132_C
Zip
Motif
Other DBs
NCBI-GeneID:
140718450
NCBI-ProteinID:
XP_072888339
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All DBs
Position
29:complement(41849586..41922973)
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AA seq
967 aa
AA seq
DB search
MDSVRCKLVASLACLLLSFSVAAAAGKVNKHKPWIETTYHGIVTENDVTVLLDPPLIALD
KDAPLRYAGEICGFRIHGQNVPFEAVMVDKTTGEAVLRSKEVMDCELQKEYTFTIQAYDC
GEGPDGENMKKSHKANVHIQVNDVNEYSPVFKEKSYKATVVEGKKYDSILRVEAIDADCS
PQYSQICSYEIVTPDVPFTIDKDGFIKNTEKVNYSKDRQYKLAVTAYDCGKKRSTEDVLV
KINIKPTCKPGWQGWSKRIEYEPGTGSLALFPSMHLETCDEPVTFIKTTIELETNHIGKG
CDRDTYSEKSLHKLCGVTSGTVDLLPSPSSSTNWTVGLPTDNGHDSDEVFEFNGTQAVKI
PDGVLTTNLEETFTISVWMRHGPASGIQGGKETILCNSDKREMNRHHYSLYVHNCRLVFL
FRQNPSENENFRPAEFHWKIDQVCDKEWHHYVLNVDIPTVALFVDGVAHDPFLVTEDYPL
HHSKIETQLVVGACWQEYTGSENENETVTEAYPGGEFRMAQFFRGNLAGLMIQSGKIESK
KVIDCLYTCKEGLDLLESENLDKSVKVHFNPTQSVLSLEGNDIESFDKSIQHMSYLNSRQ
FPTPGIRRLKISTTVKCFNEETCITIPDVEGYVMVLQPDEPRISLSGIDHFARAASEFES
DEGVPLFPELKVISTITREVEPEGEDEDESAVQESVISEEIMHNLDMCEISVLGDELNAE
QESFDVDQSQLRQRGMEMSNSSTGMTITGVDTMANYEEMLHLIRYRNWNSESLFERKFKL
ICSELNGRYSSNEFTVEVNVIHTANRVEHPNHVVVQPEFVHPVHHSSVDLSGHNLANPHP
STVVPGAATVVIVVCVSFLVFMIILGVFRIRAAHQRTIRDQENGKENEMDWDDSALTITV
NPMETYEDQHSSEEEEEEEEEESEEGDEEDDITSAESESSEEEGEQEDHQNVNRQQQLEW
DDSTLTY
NT seq
2904 nt
NT seq
+upstream
nt +downstream
nt
atggattcggttaggtgtaagctcgtcgcctcgttggcctgcctgttgctgagcttttcg
gtcgccgccgcggccggtaaagtaaacaagcacaagccttggatagaaaccacttatcat
ggtattgtaacagagaatgatgtcacagtcctgctggatcctccactgattgccttggat
aaagatgcacctctgcgttatgcaggtgagatctgtggatttagaattcatgggcagaat
gttccttttgaagctgtgatggttgataaaaccaccggtgaagctgtcttgcgttcgaaa
gaagtgatggactgtgagctgcagaaagagtacacatttactatccaggcctatgactgt
ggagagggtccagatggagaaaatatgaaaaaatcccataaagccaatgttcatatccag
gtgaatgatgtaaatgaatactccccagttttcaaggaaaagtcctacaaagctacagtt
gttgaaggaaagaaatatgacagcattttgagagtggaagcaattgatgcagactgttca
cctcaatatagtcaaatttgtagttatgaaattgttactcctgatgtgccgttcactatt
gataaagatgggtttattaagaacacagagaaggtgaactatagcaaagatcggcagtat
aagcttgcggtcactgcatatgattgtgggaagaaacgttcaacagaagatgttcttgtt
aagatcaacattaaacctacatgcaagcctggctggcaaggttggagtaaaagaattgaa
tatgaacccggtactggaagtttggcattatttccaagtatgcatttggagacatgtgat
gaacctgttaccttcattaaaacaacaatcgagttagaaacaaaccacattggcaaagga
tgtgacagggacacctattctgaaaaatcactccataaactatgtggtgttacttctggt
acagttgatctcctaccctcgccaagcagcagcacaaattggacagttggtcttcctacg
gacaatgggcacgacagtgatgaggtctttgaattcaatggtactcaagctgtgaaaatc
ccagatggcgttttgacaacaaatctggaagaaacatttactatctctgtgtggatgcgg
catggacctgcttctggtattcaagggggcaaggaaacgatcctttgcaattctgacaaa
cgagaaatgaatcgtcaccactactccctttatgtgcacaactgtcgcttggttttcctc
ttccgtcaaaatccttcagagaatgaaaacttccggcctgcggaattccattggaaaatt
gaccaggtgtgtgataaagaatggcatcactatgtactaaatgttgacatccccactgtg
gccctgtttgttgatggagttgcacatgatccattcttggttactgaggattatccattg
caccattcaaagattgaaacccagttggtggttggagcttgctggcaagaatatacagga
agcgaaaatgaaaatgaaactgtgactgaagcctatccaggaggagaattccgcatggct
cagtttttccgaggcaatctagcaggtttgatgatacagagtgggaaaattgaaagcaaa
aaggtgattgactgcttgtacacttgcaaagaagggctggatctcttggaatctgagaac
cttgacaaaagtgtgaaggttcatttcaatcccacccagtcagtgctcagcttggagggg
aacgacattgaaagcttcgataagagtatacagcacatgtcatatctcaactctaggcag
ttcccaacacctggaatcagacgattaaaaatcagcacaactgtgaagtgcttcaatgaa
gagacttgcatcactatcccagacgtggagggctacgtaatggttcttcagccagacgaa
ccaagaatcagcctgagtggtattgatcactttgcacgtgctgcctctgaatttgaaagt
gatgagggtgttccactgttcccagagctgaaggttattagcaccatcacaagagaggtc
gaaccagaaggagaagatgaagatgaatcagcagtccaagagtctgtgatatctgaagaa
ataatgcacaatctcgatatgtgtgagatttcggttcttggtgatgagctgaatgcagaa
caggaaagttttgatgttgatcagtcccaacttcgacagaggggtatggaaatgagtaac
tcttcaactggcatgaccatcacaggtgttgatacaatggcaaattatgaggagatgctg
catttgattcgctatcgaaactggaacagtgaatcgctgtttgaaaggaaatttaaacta
atttgctcagaattaaatggacgctactccagtaatgagttcaccgttgaggtcaatgtc
attcacactgctaatcgagtagagcatcccaaccatgtagtggtacaaccagagtttgtt
catccagttcatcattcttcagttgacttatccggacacaaccttgcaaatccacatcca
tccacagttgtgcctggtgcagctacagtcgttatcgttgtctgtgtcagtttcctggtc
ttcatgattatccttggggttttccgaatccgtgctgcacatcagcggacgatacgggat
caggagaatgggaaagagaatgagatggactgggatgattcagctctgacaattacagtg
aaccccatggagacgtacgaggaccagcatagtagcgaagaggaggaggaggaagaggag
gaagaaagtgaggaaggtgatgaagaagatgacattaccagtgcagagtctgaaagcagt
gaagaagagggtgagcaggaagatcatcagaatgtaaaccggcaacagcaacttgaatgg
gatgactcaactcttacctattga
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