Hemitrygon akajei (red stingray): 140718562
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Entry
140718562 CDS
T11019
Symbol
dhx16
Name
(RefSeq) LOW QUALITY PROTEIN: pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16
KO
K12813
pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16 [EC:
5.6.2.6
]
Organism
haka Hemitrygon akajei (red stingray)
Pathway
haka03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
haka00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
140718562 (dhx16)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
haka03041
]
140718562 (dhx16)
Enzymes [BR:
haka01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
140718562 (dhx16)
Spliceosome [BR:
haka03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
140718562 (dhx16)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
OB_NTP_bind
Helicase_C
HA2_C
WHD_HA2
DEAD
AAA_22
AAA_19
Cas3-like_C_2
AAA_30
nSTAND3
SecA_DEAD
PWI
nSTAND_NTPase5
Motif
Other DBs
NCBI-GeneID:
140718562
NCBI-ProteinID:
XP_072888633
LinkDB
All DBs
Position
2:complement(171314739..171369425)
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AA seq
1038 aa
AA seq
DB search
MASLERWVSDQLHQLLGLSDKYVAQFLIGTARRSGDPHDFVRRLESTGTIDITPSVRLFA
GELWAKIPRKAPEEKASRAVEREARALQQKNRTYQLLEESEESEPEGQSGRHRSKGKAKR
PHLRRKRAESSGSEAEESAKKSPSPRKQSASEEEEWEKEEKDRLKDLEERDAFAERIKKR
DKDKTRLVVERSDKKAYEEAQKRLKMTEEDQKALVPELRKRSRWEYLGKREQEKLEDLEA
EIQDDEYLFSPSILTEREKQQLEYKKKVRDLAREYKAAGEQEKQEKSNRYYMPEESRNKK
VPDRYEEPEGDGKHAPRDEQKRWEEAHMDAALLKFGARDARERNKQKEYEFVMEEDEMIE
FVSSMPMQGTVSKDEANEMSEAQRQMASLQEVRRSLPVFPYREDLLAAVAEHQVLIIEGE
TGSGKTTQIPQYLYEEGYTSGGKKIGCTQPRRVAAMSVAARVAHEIGAKLGNEVGYSIRF
EDCTSERTVLKYMTDGMLLREFLTEPDLAGYSVVIIDEAHERTLHTDILFGLIKDIARFR
QDLKVLIASATLDTEKFSTFFDNAPIFRIPGRRFPVDIYYTKAPEADYLEACVVSVLQIH
VTQPPGDILVFLTGQEEIETTCEMLQERCRRLGSKIAELLVLPIYANLPSDLQAKIFEPT
PPGARKVVVATNIAETSLTIDGIIYVIDPGFCKQKSYNARTGMESLIVTPCSRASANQRA
GRAGRVAAGKCFRLYTAWAFKHEMEETSVPEIQRTNLGNVVLLLKSLGINDLIHFDFMDP
PPHETLVLALEQLYALGALNHLGELTKLGRRMAELPVDPMLSKMILASEKYQCSEEILTI
AAMLSVNNAIFYRPKDKVVHADNARMNFFQPGGDHLVLLNVYTQWVESGYSTQWCYENFI
QFRSMRRARDVREQLEGLMERIEVELKSSAGDKILIRKAITAGFFYHTARLTRSGYKTVK
HQQSVYVHPNSSLFEEQPRWLIYHELVFTTKEFMRQVMEIDSSWLLEVAPHYYKTKELQD
AASKKMPKKAGKAREELG
NT seq
3117 nt
NT seq
+upstream
nt +downstream
nt
atggcctccctcgagcggtgggtgagcgaccagctgcaccagctgctgggcctgagcgac
aagtacgtggcccagtttctcatcgggacagcccggcgtagcggagacccccacgacttc
gtccggcggctggagagcaccggcaccatcgacatcacccccagcgtgcgcctctttgcc
ggcgagctgtgggccaagatccccaggaaggcgccagaggagaaggcgtcgcgggcggtg
gagcgcgaggcccgggccctgcagcagaagaaccggacctaccagctgctggaggagagc
gaggagagcgagcccgaggggcagtcgggacgccaccgatccaagggcaaggccaagcgg
ccccatctccgccggaagagggccgagtcgtcaggcagcgaggctgaggagagcgcgaag
aagtcgccgtcccctcgcaagcagtcagcgtccgaggaggaggaatgggagaaggaagag
aaggaccggctgaaagatctggaggagcgggacgcctttgccgagcggatcaaaaagcgg
gacaaggacaagacccgccttgtcgtggagcgctccgataaaaaggcttatgaagaggca
cagaaacgcctgaagatgactgaagaggatcagaaggccctggtcccggagctccgcaag
aggtcacggtgggagtacctgggtaagcgagagcaggagaagctggaggacctggaggca
gagatccaggacgacgagtacttgttctcgcccagcatcctcaccgagcgggagaagcaa
cagctggagtacaagaagaaagtgcgggacctagcccgggagtacaaggcagccggcgag
caggagaaacaggagaaaagcaaccgctattacatgcccgaggagtcccgcaacaagaaa
gtgcccgatcgctacgaggagcccgagggggatgggaagcacgccccccgggacgagcag
aagcggtgggaggaggcgcacatggacgccgccctcctgaagttcggcgccagggatgcc
cgcgagcggaacaagcagaaggagtacgagttcgtgatggaggaggacgagatgatcgaa
tttgtcagctccatgcccatgcagggcacggtctccaaggacgaggcaaatgagatgtcg
gaggcacagaggcaaatggcgtcgctgcaggaggtgaggaggagcctgccagtcttcccc
taccgagaggacctgctggcagctgtggctgagcaccaggtcctcatcatcgaaggggag
acgggctccggcaagacgacccagatccctcagtacctgtacgaggagggctacacgtcc
ggcgggaagaagatcggctgcacccagccccggcgcgtggcagccatgagcgtcgctgcc
agggtagcgcacgaaatcggggccaagctggggaacgaggtgggatacagcatccgcttt
gaggactgcacgtcggagcgcacggtgctgaagtacatgactgacgggatgttgctgcgg
gaattcctgacagagccggacctggcagggtacagtgtggtgatcatcgacgaagcccac
gagcgcacgctccacaccgacatcctctttggcctcatcaaggacatcgcccgcttccgc
caggacctcaaagtgttgatcgccagcgccacgctcgacaccgagaagttctccaccttc
ttcgacaatgcccccatcttccggatccccgggcgccggttccccgtcgacatttactac
accaaggccccagaagcggactacctggaagcctgtgtggtttccgtcctccagatccac
gtcacccagcctccgggagacatcctggtgttcctcaccgggcaggaggagatcgagacc
acgtgcgagatgctacaggaacgctgccgccggctgggctccaagatcgccgagctgctg
gtgctgcccatttacgccaacctgccctccgaccttcaggcaaagatcttcgagcccacc
ccacccggtgccaggaaggtcgtcgtggccaccaatatcgcagagacctccctgacgatt
gacgggatcatctacgtgatagaccccggcttctgcaagcagaagagctacaatgccagg
acggggatggagtccctgatcgtcactccctgctccagagcttcagccaatcagagggca
ggcagggcgggccgcgtggcagccggcaagtgcttccgactgtacacggcctgggccttc
aagcatgagatggaggagacatccgtcccggagatacagcggacgaacctgggcaacgtg
gtgctgctgctgaagagtctgggaatcaacgacctgatccactttgatttcatggaccca
ccccctcacgagacgctggtgctcgccctggagcagctgtacgccctgggagcgctcaat
cacctcggagagctcaccaagctgggccggcggatggcagaactcccggtggaccccatg
ctgtctaagatgatcttggcttcagagaagtatcagtgctcagaggaaatcctgaccatt
gcggctatgctgtctgtcaacaatgccatcttctaccgacccaaggacaaggtggtgcac
gcggacaatgcccgcatgaacttctttcagccgggaggtgaccacctggtactgctgaac
gtgtacacccagtgggtagagagtggatattccacccagtggtgctacgagaacttcatc
cagttccgctccatgcgccgagctcgcgatgtccgggaacagctggaggggctgatggag
aggatcgaggtggagctcaagtcttcagctggtgacaagatcctgatccggaaggcgatc
accgctggcttcttctaccacacggcccggctgactcgctccggctacaagacggtgaag
caccagcagtcggtgtacgtccaccccaacagcagcctgttcgaggagcagccccgttgg
ctcatctaccacgagctggtcttcaccaccaaggagttcatgagacaggtgatggagatc
gacagcagctggctgctggaggtcgccccgcactactacaaaacaaaggaactgcaggac
gccgccagcaagaagatgcccaagaaagcgggcaaggcgcgagaggagctgggctga
DBGET
integrated database retrieval system
