Hemitrygon akajei (red stingray): 140719120
Help
Entry
140719120 CDS
T11019
Name
(RefSeq) CCR4-NOT transcription complex subunit 3-like isoform X1
KO
K12580
CCR4-NOT transcription complex subunit 3
Organism
haka Hemitrygon akajei (red stingray)
Pathway
haka03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
haka00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
140719120
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
haka03019
]
140719120
Messenger RNA biogenesis [BR:
haka03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
140719120
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
140719120
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Not3
NOT2_3_5_C
Motif
Other DBs
NCBI-GeneID:
140719120
NCBI-ProteinID:
XP_072889610
LinkDB
All DBs
Position
31:complement(11723427..11855163)
Genome browser
AA seq
741 aa
AA seq
DB search
MRALDLSSLWREWATETVSFARTCSYIIIKRKSADAGNPSNTQKVLEELSRSGSIYSKSA
LEHGFKALTDRSVMADKRKLQGEIDRCLKKVSEGVETFEDIWQKVHSAANANQKEKYEAD
LKKEIKKLQRLRDQIKTWVASNEIKDKRQLQDNRKLIETNTIDSLNMQVDLFESEMETLS
AVTRKKKGEKEKQDRLEELKHYIERHRYHIKMLETLLRMLDNSTIEVDQIKKIKDDVEYY
VDSSQDPDFKENEFLYDDLDLEDIAQTSIMATSPASNSNSNVEDELFNQCNSTPTSTTSS
SPVPLSPANQSVENHEDERKRSRSDSEMSMSPAKVLGKTHHGNNLPPSISISQSAQGSNT
KTPTLPSNGSSNGGSKLLQTSKSYSLTQGTNSVSAYAAAVAAGTTTINTTSSFQSRPANA
VPIPTSKQQNGTASYSAVVAENSVEHQNSYSLPSSTNSQPSGTTPIQNNVKEPVSVSVAS
TTSIIPVLAASQVNTQASNFSDLKPTPAMMNGPLPFVSQELKQAPEALSSLKSMAERAAV
SAGLEEQVQSLHLNERVLLSTPSSQSNSMTSNVPQTTEVHLQPMLGVCPLSPVHLSKDQE
YQLHMVESAWLHMPHPSDSERIRHYLPRNPCPTPPYHHQVPPVHSDTLEFYQRLSTETLF
FIFYYLEGTKSQYLAAKALKKQSWRFHTKYMMWFQRHEEPKTITDEYEQGTYIYFDYEKW
GQRKKEGFTFEYRYLEDRDLQ
NT seq
2226 nt
NT seq
+upstream
nt +downstream
nt
atgagagctctagatttatcaagcctgtggagggaatgggctacagaaaccgtatctttc
gctaggacttgttcgtatatcataatcaagagaaaatctgcagatgctggaaatccaagc
aacacacagaaagtgctggaggaactcagcaggtcgggcagcatctacagcaaaagcgca
ctggagcatggttttaaggcactgactgatcgttcagtcatggctgataaaaggaagtta
caaggagaaattgaccgctgtctgaagaaagtcagtgaaggtgtagaaaccttcgaagac
atctggcaaaaggttcacagcgcagcaaatgcaaatcagaaggaaaaatatgaagctgac
ctgaagaaggaaattaagaaactacagaggttgcgagaccaaataaagacatgggtggcc
tccaacgaaattaaagacaagaggcagctgcaagacaacaggaaactcattgaaacgaat
acgatagactcattaaatatgcaggttgatctctttgaaagtgaaatggaaacgttgtcg
gcagtgacgaggaaaaagaaaggcgagaaagagaaacaggacaggctagaagaattgaag
cattacatcgagaggcacaggtaccacattaaaatgctggaaaccctcctgcgtatgtta
gacaacagcacaatagaagtggaccagattaagaagatcaaagatgacgttgaatactat
gttgattcctctcaggacccagactttaaagaaaatgagtttttatacgatgacctagac
cttgaggatatagcacaaacatcaataatggcaacatcaccagcaagcaacagtaatagc
aatgtggaagatgaactttttaatcagtgtaacagcactcccacctctacgacctcaagt
tctcctgtacctctcagcccagccaaccagtctgtggaaaatcatgaagatgagcggaaa
cggagtaggtcagacagcgaaatgagcatgtcccctgcaaaggttcttggcaagactcat
catggtaacaatctccctccatccatttctatttctcagagtgcgcaggggtcgaacaca
aaaacaccgaccctgccctcaaatggatccagcaacggtggaagtaaactgctacaaacc
agcaaaagctactctctgacgcaagggacgaactcagtttctgcctatgcagctgctgtg
gcagcaggaaccaccacaatcaacaccaccagctcattccagtcaagacctgccaatgcg
gtgcccattcccaccagcaagcagcaaaatgggactgcaagttatagtgctgttgttgct
gagaacagtgtggaacatcaaaatagctacagtcttccctctagtacaaacagtcagcca
agtggcacaacacccatccagaataatgtgaaagaaccagtcagcgtatctgtagccagt
accacgagcattatccctgtacttgcagccagtcaagtcaacacacaagcctccaacttt
tctgatcttaagccaacaccagccatgatgaatgggcctttgccgtttgtctcccaggaa
ctgaagcaggctccagaggcactgagctctttgaaaagtatggcggaacgagcagctgtg
agtgcaggattggaagagcaagtccagtctttgcatttgaatgagagggttctcctcagc
accccatcatcacagagcaattcgatgacatctaacgttccacaaacaacagaggttcat
ctccagcctatgctgggtgtgtgcccactcagcccagtacatctttccaaggaccaagaa
tatcagctgcacatggtggaatcagcgtggctacacatgccgcacccatcagactctgag
aggatacgacactacctccctcgtaatccatgtcctacaccgccttatcaccatcaggta
ccccctgtccattcggacacactggaattctatcaacggttgtccactgaaacactcttc
tttattttctactacttagaggggaccaagtcccagtatttggctgctaaagctttgaag
aaacagtcctggaggttccacaccaagtacatgatgtggtttcagagacacgaagagcca
aaaacaatcacagatgaatacgaacagggaacatacatttactttgactatgagaaatgg
ggccagagaaagaaggaaggcttcacatttgaatacagatacttggaggacagggacctg
cagtaa
DBGET
integrated database retrieval system
