Hemitrygon akajei (red stingray): 140725184
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Entry
140725184 CDS
T11019
Symbol
rpap1
Name
(RefSeq) RNA polymerase II-associated protein 1 isoform X1
KO
K20826
RNA polymerase II-associated protein 1
Organism
haka Hemitrygon akajei (red stingray)
Brite
KEGG Orthology (KO) [BR:
haka00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
haka03021
]
140725184 (rpap1)
Transcription machinery [BR:
haka03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Others
140725184 (rpap1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RPAP1_C
RPAP1_N
THOC2_N
CEP104-like_TOG
SH3-A_UBE2O
Motif
Other DBs
NCBI-GeneID:
140725184
NCBI-ProteinID:
XP_072896405
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All DBs
Position
3:complement(89026008..89176552)
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AA seq
1419 aa
AA seq
DB search
MLGRPKPGESEDDLLRFQQNFLATGMFPAAKVIKKADKRKVESESAGGSQANEDLRDMVT
LEALPDHPPSLMPVAPKKSKFKAERVRFQEDDSEEQMDLQDRHITAVLSKIIERDTSGST
INPPLSTGQAFPKVFHRSEIQSELLKPVSGRKSIFAQKLEAKRAIEAHRAESSQCRISPL
TTGSGQPISAQCPTRETLEKSHSPVSDNGRWASEEKLGKEISPQEAQRVHEENLARLQTM
SKEEIEEERNNLMARLDPSLIAFLKSRRSGKSYVEASSNKIERQGAENNYEDKQSDSHLE
AALQSDSSKEDPMNQEITEPDIPLKPEKGWVHMDVLEYEKLEWMKDLPKPRWRKTNKEMQ
ARFNFHGDLIPPGVDVPTYLGLHHHGEEPEEAGYSLQELFHLSRSQIIQQRTLALQMLSR
VIQKAKAGDFSSSLKHSVLRMLLDAGCLFLLRFALDDSAENVIAACVQALRALLVSPSDE
ECLDRTFCWYLGSSVFPLRPNETEEDDDDDEEEEDDEEESKMKQSEKAKSKEDKKADTDV
ARVDIIKGLLKMQVLHRLRYILEVVRPVPSVVLDILEILIRIARHSSEACNQILGCPRLM
ETIVSEFLPSTWTIQTLTTDEPITSSYGVPVAAAMKLFRVLASAGRNMSAILLSKFKLKE
RIGRFIAQDPCDLHLEQQEAYALNIEALRLWAVAANYGQACDMYRDFYPALMKILQTLPN
LVSQPRKEDPLFDYSLQRAETLVCLLISLTHSSGCTSELQAQFTSSSGDQEGHIPPPPLD
WSHVEGIKPLLEGFVKRCFKELSCPSTWNRVRQLTATYIIYLATYYSKLSQQPSYRPVEC
LVELEQFWMESLSPLLNQPTLEKMFVDLRSYSALCNPKSCCPGPETVRSLVSLGCVGEMH
HLSLTGSKSPFVFVIALFYLLDTVCVLHKGLAEKCSAVLHSKGLRDYLVHSCKGSPPISH
RSAWLLRHEFHLQHFVLKLASKTVAVSPQVAQQAPLYHYVALMLLSRLLPGSEFLAYDLL
SGMAFNQALIPEGTSGGPEAEDLSNILRLGCHGDAAERTCANPTRGTLLCKAFSQLPTIR
AHYLSHFAHLQASVLRSQNSYTGRTHLVQSVLLPEMAGPLLPSDWTFLPLINLYDRVSRE
ETKGKMVDCLPENLVEVVSSSLQCVLLLETWRGGILQGLPLAAKLVRLCCIFLTGSNLFL
EPAVRDYLSALLVIYCQQKRLDSLDLSATLPGLASFHDLYISLLEQFESVSFGDPLFGCF
LLLPLQRKFDVRLRQAVFGEHVSVLRSLGVPLKQLPIPLENYTHPMESSLDLLRQYFKTL
VTATLRFSWCPVLYVVAIAQVNSFIFSQEAVDEEFDAARRSMLRKSYLLTDEVLRRHLLH
FKLPNVESNIGFDMYQELPPMRQKWLQKVLADLLHLKKE
NT seq
4260 nt
NT seq
+upstream
nt +downstream
nt
atgctgggaaggccgaaacccggagaatcggaggatgacctcctgcggtttcagcaaaat
ttcctagccacagggatgtttccagctgctaaagtcataaagaaggcagacaagaggaaa
gtggaatcggagagtgctggtggaagtcaagccaatgaagatttaagggacatggttacc
ttggaagctcttcccgaccatcctccatcactcatgccagttgcacccaagaagtccaag
tttaaagcagaaagagtcagattccaggaggatgatagtgaggagcagatggatctacag
gacagacacatcacagctgtcctttccaagatcattgagagagacacttcagggagtacc
ataaatcctccgttatcaacaggacaagccttcccaaaggtctttcacaggtcggagata
caaagcgagctgttgaagccggtttcaggaagaaaaagtatctttgcccagaaacttgag
gcaaaaagagcaattgaagcacatcgggcagaatcttcacagtgtcgaatcagcccattg
accacgggttcagggcagccaatatcagctcagtgtccgactagagaaacattggaaaag
agccactcaccagtttcagataatgggagatgggcttcagaagaaaaactggggaaagaa
ataagccctcaagaagctcagagggttcatgaagagaaccttgctagactgcagaccatg
tctaaggaagaaattgaggaagaacgcaataacctcatggcacgattagacccaagtttg
attgcatttctaaaatcaagaagatcagggaaaagctatgttgaagcctccagcaataaa
atcgaaagacaaggagcagaaaacaactatgaggataagcaaagtgattctcacttggag
gcagcactgcagtccgattcatccaaggaagatccaatgaatcaagaaattacagaacct
gatattccactgaaacctgagaaaggatgggtccacatggatgtgttggagtatgagaag
ctggaatggatgaaagatctgcctaaacccagatggcggaagaccaataaggagatgcaa
gcaaggttcaatttccatggtgacttaatacctccaggtgtcgatgttccaacttatctc
ggattgcaccatcatggggaagagccagaggaagctggttattcacttcaagaactcttc
catttatctcgcagtcagataattcagcagcgaactctcgcccttcagatgttgtcacga
gtcattcaaaaggctaaagcgggtgatttctcctcttccctcaagcacagtgtgttgaga
atgctgctggatgctggctgtttgttcctccttcgctttgcactggatgatagcgctgaa
aatgtaattgctgcctgtgttcaggctctaagggcacttttagtctccccttctgatgag
gaatgtcttgacaggaccttctgctggtacttggggtcatcagtgtttcccctccggcct
aatgaaacagaggaggatgatgacgatgatgaagaggaggaggatgatgaggaagaatca
aaaatgaaacaaagcgagaaagccaagtccaaggaagataagaaagcagatacagatgtt
gcccgtgtggatattattaaaggtttgctgaagatgcaagttcttcaccgtctgcgttac
attctggaagttgtccgacctgtgccttcggtcgtccttgacattttggagatcctgatt
cgaatagcaagacactcttctgaggcttgtaatcagattctagggtgcccaaggctaatg
gagacaattgtctcagaattcttaccatctacctggacgattcagactctgacaacggat
gaaccgataaccagtagctatggtgtgccagttgctgctgccatgaaattgtttcgtgtc
ctggcatctgcaggaaggaacatgtcggctattttgttaagcaaattcaagttgaaagag
cgaattgggagattcatagcacaagatccttgtgacctgcacttggagcaacaggaagcc
tatgcattaaacattgaggctttgcggctatgggccgttgcagccaactatggacaagca
tgtgacatgtacagggacttctatcctgcactgatgaagattctccagaccttaccaaac
ctggtttcccagccgagaaaggaggatccattgtttgattattccttgcagagagctgag
actctggtttgcctcctgatcagcctcactcacagttcaggctgtacttctgaactgcag
gcccagttcacatccagttctggagaccaggagggacacattccccctccgccattagac
tggagccatgtggaaggtatcaagccacttctggaaggctttgtcaaaagatgctttaag
gagctcagctgtccgtcgacttggaatagagtgagacagctaactgcaacgtatatcatc
tacctggcgacatactacagcaaactcagccaacagccttcatatagacctgttgagtgc
ttggtagaattggagcagttttggatggaatccttgtctccactacttaatcagcctaca
ttagagaagatgtttgtggacctcagatcttattcagccctgtgcaaccctaagtcctgt
tgtccgggtccagagactgtccgtagtcttgtgtcactgggctgtgttggagaaatgcat
cacctcagcctgacgggatccaaatccccttttgtgtttgtgattgcattgttttattta
ctggacaccgtctgtgttttgcacaaaggcttggcagaaaagtgctctgccgtcctgcac
agcaaaggtttgagggattacttggtgcacagctgtaaggggagcccgccaataagccac
aggtccgcctggttgctgcggcacgagttccacctccagcattttgtgcttaagctggca
tccaagacggttgcggtcagtcctcaagttgcccagcaggctccactgtatcactacgtt
gccctgatgttgctgagccggctgctgccaggaagtgagttcttggcctatgacctgctc
tctgggatggcctttaaccaggctttgataccggaaggcacatccggtggccctgaagca
gaagacctttcgaacatcttgaggctcgggtgccatggggacgctgccgagagaacttgt
gcaaacccgacccgtggcacactgctgtgcaaagccttcagccagctccccaccatccgt
gcccattacctctctcactttgctcacctccaggcttctgtcctgcggtcccagaactcc
tacacaggccggacccacctggtccaatctgtgctactcccggaaatggccggtcctctc
ctgccatctgattggaccttcctgcccctgatcaacttgtatgaccgtgtgagccgtgag
gaaacgaagggcaagatggtggattgtcttcccgagaatctggtggaagtggtgagcagc
agtctgcaatgcgtgctattgctggagacctggcggggtgggatattgcagggactgcct
ctggctgccaagctggtgcgactctgctgcatcttcctcacgggcagcaacttgtttctg
gagccggcggtccgtgactacctatccgccctcctggtcatctactgtcagcagaagagg
ctggactcgctggacctcagtgctacactcccaggactggcctcctttcacgacctgtac
ataagccttcttgaacagtttgagagcgtctcgtttggtgacccactttttggctgtttt
ctcttgctgcctctgcagaggaagttcgatgtccgactgcgccaggctgtttttggggag
cacgttagtgtgttgcggtcactgggggtgccactgaagcagctgccgatccccttggaa
aattacacccatcccatggagtcttcattggatctgctgcgccagtatttcaagaccttg
gtgactgccactctacgcttcagctggtgtcctgtgctctacgtggtagccattgctcaa
gttaacagcttcatcttctcacaggaggcagttgatgaggagtttgatgctgcccgaagg
agtatgttgcgaaagtcatacctattaacagatgaggtgttgaggaggcatctgcttcat
ttcaagttgcctaacgtggagtcaaacatcgggttcgacatgtaccaggaactgcctccc
atgaggcaaaagtggctgcagaaagtccttgcagacctactacatctgaagaaggagtag
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