Hemitrygon akajei (red stingray): 140725268
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Entry
140725268 CDS
T11019
Symbol
vps18
Name
(RefSeq) vacuolar protein sorting-associated protein 18 homolog
KO
K20181
vacuolar protein sorting-associated protein 18
Organism
haka Hemitrygon akajei (red stingray)
Pathway
haka04140
Autophagy - animal
haka04148
Efferocytosis
haka05132
Salmonella infection
Brite
KEGG Orthology (KO) [BR:
haka00001
]
09140 Cellular Processes
09141 Transport and catabolism
04140 Autophagy - animal
140725268 (vps18)
04148 Efferocytosis
140725268 (vps18)
09160 Human Diseases
09171 Infectious disease: bacterial
05132 Salmonella infection
140725268 (vps18)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
haka04131
]
140725268 (vps18)
Membrane trafficking [BR:
haka04131
]
Endosome - Lysosome transport
Tethering complex
CORVET complex
140725268 (vps18)
Hops complex
140725268 (vps18)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Pep3_Vps18
VPS18_RING_C
Clathrin
zf-RING_Vps41
zf-RING_5
zf_RING_Vps8
zf-RING_16
zf-ANAPC11
zf-C3HC4_2
zf-RING_2
zf-RING_UBOX
zf-rbx1
DUF5600
DUF1664
DUF4446
zf-RING_11
zf_RING_Vps8_fungal
Motif
Other DBs
NCBI-GeneID:
140725268
NCBI-ProteinID:
XP_072896625
LinkDB
All DBs
Position
3:102708869..102726827
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AA seq
977 aa
AA seq
DB search
MSSILDEYEDSQARACFRPSGFPYQQHRLGSTGIGQSGYVSARLEEEKPIFSKQRIDFTP
PSAITHLVVCNNQLCMSMGKDTLLRIDLGKPDQPNQVEVGRKDDARIHKLFLDPSGSHLL
ISLTSNECLYLNRNSQKVKSLSRWKGHLIESVGWNKYLGNESSTGPILVGTSQGQLYEAE
IVVSEERLFISSPDQHFKNVYNLEEDGSPAPVCCLEIERSADARLFVIATTRKRLYQFVG
KAPESPDPHMFQPMFSQYTNTLPSFQEFPASLGYSEISFYTSKLRSSPRSFAWMMGNGVL
YGTLDFTRPDSLLSDVQVWEYPGDIAPELEPPRSIVLTQFHFLLLLPDRVKAICTLNGQL
VFEDVFPDKFGHLLRMVKDSVAGLIWIYTEKAVFRYHIQKESRDVWQMYMNMGKFELAKE
YCKDRPECLDTVLAKEADYCFRNKKYVESAKYYALTQKYFEEIALKFIEAKQEEALKEFL
LKKLNNLKLEDKTQLTLLVTWLAEIYLNWLGTLEADKDKKNQFEATREEFRKFLSGSKIK
ECLLNNRSTIYDLLASHGNVEDMIFFSVIMQDYERVVAHHCQHDGYSAALEVMSKCQDPA
LFYKFSPVLMQHIPKQVVDAWINMRKRLDPKNLIPALVNYSQIGSSTQVCEAIRYLEFCV
HQLEVTDQAIHNYLLSLYAKYKPKALLWYLEQAGSNADCIHYDLKYALRLCAENKQTEAC
VHIYKTMELYEEAVDHALQMDVDLAKSCADMPEDDEELRKKLWLKIARHVVQEEKDVKKA
MVCLSSCNLLKIEDILPFFPNFVTIDHFKEAICSSLQEYNKHIDELKQEMEEATESAKRI
REDIQEMRNKYGVVESQEKCASCDFPLLNRPFYLFLCGHMFHSDCLLQEVMPHLSQFKQN
ILEELQRKLVAAAQTKSRQRCKEGEANDRGQQSRDQIKSDIDDLVADECIYCGELMIKSI
DKPFIDPQKSEEENCWL
NT seq
2934 nt
NT seq
+upstream
nt +downstream
nt
atgagttccatcctggatgagtacgaggattcacaggcccgggcctgttttcggccttct
gggtttccgtaccaacagcaccggctgggaagcacaggaattggacagtccggctatgtc
agcgcccgactggaagaggaaaagcccatcttttccaagcagagaattgatttcactcct
cctagtgcaatcacccacctagtggtgtgcaacaatcagctctgcatgagtatgggcaag
gacacactgctcaggattgatcttggaaaaccagaccagccaaaccaggttgaagtgggg
cgcaaggatgatgctcggatccacaaactgttcctggatccctcggggtctcacctcctg
atcagcctcacctccaatgagtgtctctaccttaacagaaattctcagaaagtgaagagc
ctctctcgctggaaaggacacttgattgagagcgttgggtggaacaaatatctgggcaat
gagagcagcacaggccctatcctggtgggaaccagccagggccagttgtatgaagcagag
attgttgtgtcagaagagcggctcttcatctcgagtcctgaccagcatttcaagaatgtg
tacaatctggaggaggatggatcccctgctccagtctgctgtctggagattgagcgaagt
gctgacgcccggctctttgtcatcgccaccacacggaagcgtttgtatcaatttgtgggc
aaggctccagagagccctgatccacacatgtttcagcccatgttcagtcagtataccaac
actttgcccagcttccaggagttcccagcaagcctgggctatagcgagatctctttctac
acctctaagctacggtctagccctcgatcatttgcctggatgatgggcaatggcgtgctc
tatggcaccttggacttcacccggcctgattcccttctaagtgatgtacaagtctgggag
tacccaggtgacatcgcccctgagcttgagcccccccggtccatcgtcctcacccagttt
cacttcctactgttgcttcctgatagggtgaaggccatttgcacactgaatgggcagctt
gtctttgaggatgtgttccctgacaagtttggccacctcctccgtatggtcaaagattcg
gtggctgggctgatatggatatacacggagaaggcagtgttccgttatcacattcagaag
gaatcgcgggatgtctggcagatgtacatgaacatggggaagtttgaactggctaaggag
tattgcaaagaccggcctgagtgtctggacactgttcttgctaaggaagcagattactgc
tttcgaaacaaaaagtatgtggaaagtgccaagtactatgcactgactcagaagtacttt
gaggagatcgctctgaagtttattgaagccaagcaagaggaggccctgaaggagttcctt
ctgaagaagctgaataacctgaagttggaggacaagacacaactgacgctgctggtgact
tggcttgctgaaatctacctaaactggctgggtactcttgaggcagacaaagacaagaag
aaccaatttgaggcaaccagggaggagttccgcaagttcctgagtggctccaagataaag
gagtgtctcttaaacaatcgctcaactatctatgacctcctcgccagccatggcaatgtg
gaggacatgatcttcttctctgtgattatgcaggactacgagcgggtggtggcccaccac
tgccaacatgatggttacagtgcagcactggaggtcatgtccaagtgccaggaccctgct
ctcttctacaagttttctcctgtcctcatgcagcatattcccaagcaggtggtagatgcc
tggatcaacatgaggaagaggctggatcccaaaaacctcatcccagccttggtcaactac
agccagattgggagctcgacgcaggtctgtgaagctattcgctaccttgaattttgtgta
caccagctggaagtgacagaccaggccattcacaactacctgctgtctctctatgccaag
tacaagcccaaagccctactttggtacctggaacaggcgggctctaatgcagactgtatc
cactatgacctcaagtatgcactacgtctctgtgcagagaataaacagacagaggcctgt
gtgcacatatacaagaccatggaactgtatgaggaggcggtggaccacgctctccagatg
gatgtggaccttgctaaatcatgtgcggacatgccagaggatgatgaagagctccgaaag
aaactgtggctgaagattgcccggcatgtggttcaggaggagaaggatgtgaagaaggcc
atggtgtgcctgtccagctgcaacctgttaaagattgaagatattctacccttctttccc
aactttgtgaccattgaccatttcaaggaagccatctgcagttctctgcaggagtacaac
aagcatattgatgagctcaagcaggagatggaggaggcaactgaaagtgccaagcgaatc
cgcgaggacatccaagaaatgaggaacaaatatggggtggtggagtctcaggagaagtgt
gcatcatgtgacttcccactgttgaaccgccctttctatctgttcctttgtggccacatg
ttccattctgactgtctgctgcaggaagtcatgccccacctttctcagttcaaacagaat
atactggaggagctgcagagaaagctggttgcagctgctcagactaaatcccggcaacgc
tgcaaggaaggagaagccaatgaccggggtcagcagtcccgtgaccagatcaagtcagat
attgatgaccttgtggcagatgaatgtatctattgtggagaactgatgattaaatcaata
gataaaccatttattgacccacagaaaagtgaggaagagaactgctggctgtga
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