KEGG   Hemitrygon akajei (red stingray): 140727443
Entry
140727443         CDS       T11019                                 
Symbol
u2af1
Name
(RefSeq) splicing factor U2AF 35 kDa subunit isoform X1
  KO
K12836  splicing factor U2AF 35 kDa subunit
Organism
haka  Hemitrygon akajei (red stingray)
Pathway
haka03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:haka00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    140727443 (u2af1)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:haka03041]
    140727443 (u2af1)
Spliceosome [BR:haka03041]
 Complex A
  U2 snRNP components
   U2 related factors
    140727443 (u2af1)
 Complex B
    140727443 (u2af1)
SSDB
Motif
Pfam: zf-CCCH RRM_1 Torus zf_CCCH_4 Nup35_RRM_2 zf-CCCH_2
Other DBs
NCBI-GeneID: 140727443
NCBI-ProteinID: XP_072900839
LinkDB
Position
5:complement(981296..1071631)
AA seq 262 aa
MAEYLASIFGTEKDKVNCSFYFKIGACRHGDRCSRLHNKPTFSQTIALLNLYRNPQNCTQ
TADGFHCAVGDVEMQEHYDEFFEEVFTEMEEKYGEIEEMNVCDNLGDHLVGNVYVKFRHE
EDAEKAVNDLNNRWFNGQPIHAELSPVTDFREACCRQYEMGECTRGGFCNFMHLKPISRE
LRRELYGRRRKSQQHGSRVTSSGDKRLLTITPKHLMAAIRHRSRSRSRERKRSRSRERGG
RGGRDRDRDRRRSKDRERSGRF
NT seq 789 nt   +upstreamnt  +downstreamnt
atggcggagtacctggcgtcgatattcggtaccgagaaggacaaggtcaactgttcattt
tattttaaaattggagcctgtcgtcatggagacagatgttctcgtttgcacaacaagccc
acattcagtcagaccattgcgctcttgaacttataccgtaaccctcaaaactgtacccag
acagcagacggtttccactgtgctgttggtgatgttgaaatgcaggaacattatgatgag
ttctttgaggaggtcttcacagaaatggaggaaaagtatggtgaaattgaagagatgaat
gtgtgtgacaatctgggtgatcacctggttggaaatgtctatgtaaagtttcgccatgaa
gaagatgcagaaaaggcagtgaatgatctaaacaaccgctggtttaatggacagcctatc
catgcagagctctcacccgtgactgatttcagagaagcctgttgcagacagtatgaaatg
ggggaatgcacccgggggggcttctgtaacttcatgcacctgaaaccgatttcacgggag
ttacgccgtgagctttatggacgccgtcgcaagagccagcagcacggtagccgtgtgacc
tcgtctggggacaaacggctgctaaccatcaccccaaagcacttaatggctgccatcaga
cacagatcaagatcaagatctcgtgagcgcaagcgctccaggtcacgtgagcgtggaggc
cgcggtggccgggatcgagaccgtgatcgtaggcgttccaaggatcgtgaacgatctggg
aggttctga

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