Hemitrygon akajei (red stingray): 140728344
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Entry
140728344 CDS
T11019
Symbol
sf3b1
Name
(RefSeq) splicing factor 3B subunit 1 isoform X1
KO
K12828
splicing factor 3B subunit 1
Organism
haka Hemitrygon akajei (red stingray)
Pathway
haka03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
haka00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
140728344 (sf3b1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
haka03041
]
140728344 (sf3b1)
03036 Chromosome and associated proteins [BR:
haka03036
]
140728344 (sf3b1)
Spliceosome [BR:
haka03041
]
Complex A
U2 snRNP components
U2 snRNP specific factors
140728344 (sf3b1)
Complex B
140728344 (sf3b1)
Complex C
U2 SnRNP specific factors
140728344 (sf3b1)
Chromosome and associated proteins [BR:
haka03036
]
Eukaryotic type
Chromatin remodeling factors
B-WICH complex
140728344 (sf3b1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SF3b1
PPP2R1A-like_HEAT
TOR1L1_N
HEAT_EZ
HEAT_EF3_N
HEAT_ECM29
Htt_N-HEAT_1
HEAT_2
XMAP215_CLASP_TOG
Adaptin_N
CEP104-like_TOG
UNC45-central
DUF2298
Motif
Other DBs
NCBI-GeneID:
140728344
NCBI-ProteinID:
XP_072903033
LinkDB
All DBs
Position
5:154131933..154170918
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AA seq
1325 aa
AA seq
DB search
MAKIAKTHEDIEAQIREIQNKKAALVIEGDADGVGLDSTGYYDQEIYGGSDSRFAGYMTS
IPANEQEEDDDDYSSPSLLGQKKPGYHAPVALLNDIPQSNEQYDPFAEHRPQRIAEREDE
YKTRRRQMIISPERHDPFADGGKTPDPKLHVRTYMDVMREQHLTKEEREIRQQLAEKAKA
GDLKAVNGTAQQPAKRKRRWDQTADQTPSATPKKLSSWDQAETPGHTPGHTPGHTPGHTP
GHTPGNTPSQSRWDETPGRSKGSETPGATPSSRMWEPTPSHTPAGAATPGRDTPGHATPG
HGGATSSVRKNRWDETPKTDRETPGHGSGWAETPRTDRGGDSIGETPTPGASKRKSRWDE
TPASQMGGSTPLLTPSGITPKGTPAMAMATPTPGHLMSMTPEQLQAWRWEREIDERNRPL
TDEELDAMFPEGYKVLPPPAGYVPIRTPARKLTATPTPLGGLTGFHMQSEERSAKNMNDQ
PSGNLPFLKPDDIQYFDKLLVEVDESTLSPEEQKERKIMKLLLKIKNGTPPMRKAALRQI
TDKAREFGAGPLFNQILPLLMSPTLEDQERHLLVKVIDRILYKLDDLVRPYVHKILVVIE
PLLIDEDYYARVEGREIISNLAKAAGLATMISTMRPDIDNMDEYVRNTTARAFAVVASAL
GIPSLLPFLKAVCKSKKSWQARHTGIKIVQQIAILMGCAILPHLRSLVEIIEHGLVDEQQ
KVRTISALAIAALAEAATPYGIESFDSVLKPLWKGIRQHRGKGLAAFLKAIGYLIPLMDA
EYANYYTREVMLILIREFQSPDEEMKKIVLKVVKQCCGTDGVEANYIKTEILPPFFKHFW
QHRMALDRRNYRQLVDTTVELANKVGAAEIISRIVDDLKDEAEQYRKMVMETIEKIMGNL
GAADIDHKLEEQLIDGILYAFQEQTTEDSVMLNGFGTVVNALGKRVKPYLPQICGTVLWR
LNNKSAKVRQQAADLISRIAVVMKTCQEEKLMGHLGVVLYEYLGEEYPEVLGSILGALKA
IVNVIGMHKMTPPIKDLLPRLTPILKNRHEKVQENCIDLVGRIADRGAEYVSAREWMRIC
FELLELLKAHKKAIRRATVNTFGYIAKAIGPHDVLATLLNNLKVQERQNRVCTTVAIAIV
AETCSPFTVLPALMNEYRVPELNVQNGVLKSLSFLFEYIGEMGKDYIYAVTPLLEDALMD
RDLVHRQTASAVVQHMSLGVYGFGCEDALNHLLNYVWPNVFETSPHVIQAVMGALEGLRV
ALGPCRMLQYCLQGLFHPARKVRDVYWKIYNSIYIGSQDALIAHYPRIFNDDKNTHVRYE
LDYIL
NT seq
3978 nt
NT seq
+upstream
nt +downstream
nt
atggcgaagatcgcaaaaacacatgaagatattgaggcacagatccgagaaatccagaac
aagaaggcagctcttgttatagaaggtgatgcagatggagttggtcttgattcaactgga
tactatgatcaggaaatctatggcggaagtgacagcagatttgcagggtatatgacatca
attcctgcaaatgaacaagaagaggatgatgatgactattcttctccaagtttgcttggc
cagaaaaagccgggatatcatgcaccagtggcgctccttaatgatataccacagtcaaat
gagcagtatgatccgtttgctgaacataggccgcaacgaattgcggaaagagaggatgag
tacaaaacacgtaggagacagatgattatttcccctgagcgacatgatccatttgcagat
ggtggaaagacaccagaccctaaattgcatgtcagaacttacatggatgttatgcgagaa
caacatttaacaaaggaagagagagaaatcagacaacagttggctgagaaagctaaagct
ggggatctaaaagcagtcaatggaacagcccaacaacctgccaagcgcaagcgccgttgg
gatcaaacagcagatcaaactccaagcgctactcccaagaaattatctagctgggatcaa
gcggagactccagggcacacaccagggcatacacctggacacacacctgggcatactcca
ggtcacacacctggcaacactccttctcagagccgatgggatgaaacacctggtcgatca
aagggcagtgagactcctggtgcaaccccaagctcaagaatgtgggagcccactcccagt
cacacaccagcaggagctgctacacctggacgagacacacccgggcatgctacaccaggt
catggaggcgcaacttccagtgtgcgcaaaaatagatgggatgaaactccaaaaacagat
agagaaacacctggacatggcagtggatgggctgaaacaccacgtacagatcgtggaggt
gactccatcggtgaaactccaacccctggtgcaagcaaaagaaaatctcgttgggatgaa
acaccagctagtcagatgggaggtagtactccattgcttactcccagtggaatcacacca
aaaggcacaccggcaatggctatggcaacaccaacaccaggtcatttgatgagtatgaca
cctgaacaactgcaggcttggcgctgggaacgtgaaattgatgaaaggaatcgtccactc
acagatgaggaactggatgcaatgttccctgaaggctataaggtccttccacctccagct
ggttatgttccaattcgaacgcctgctcgtaagctgactgcaacgccaacaccgcttgga
ggtctaactggtttccacatgcaatctgaggaacgttcagcaaagaatatgaatgatcaa
ccctctggtaatcttccattcctcaagcctgatgacatccaatactttgacaaattgttg
gttgaagttgatgaatctaccctgagtccagaagagcaaaaagaaagaaagataatgaag
ttgcttttgaagataaagaatggcactcctccaatgaggaaggctgccttgcgtcaaatt
actgataaagccagagaatttggagctggtcccctattcaatcagattctcccattgctg
atgtctccaactcttgaagaccaggagcgccacttgctggttaaagttattgaccgaatc
ctctacaagttggacgatttagtccgaccatacgtgcacaagattcttgtggttattgaa
ccattgctgattgatgaagactattatgcaagagtagaaggcagagaaatcatttctaac
ttagcaaaggctgcgggtcttgccaccatgatttctactatgcgtcctgatattgataac
atggatgaatatgtaagaaacacaacagctagagccttcgctgttgttgcttcagccttg
ggtattccatcactgctgcctttcctcaaagctgtatgcaagagtaaaaaatcatggcag
gctcgacatacaggaatcaaaattgtgcagcagattgccatccttatgggttgtgccatc
ttgcctcatttgaggagcttggttgagattattgaacatggtctggttgatgagcagcag
aaagtacgaactatcagtgctctggctattgctgccttggctgaagctgcaactccatat
ggcatcgagtcatttgactctgttctgaaaccattgtggaaaggtattcgacaacataga
ggcaaaggtttggctgcctttttaaaggctattggttacttgattccgcttatggatgct
gaatatgcaaactactatacacgagaagtgatgttgatccttatccgagagtttcagtct
cctgatgaagaaatgaaaaaaatcgtacttaaggtggtaaagcaatgttgtggaacggat
ggtgtggaagccaattacatcaaaacagaaatccttcctccatttttcaagcacttctgg
cagcatcgaatggctttggacaggagaaactacagacagttagtagataccactgtggaa
cttgcaaacaaggttggagcagctgaaataatctccaggatagttgatgatttaaaagac
gaagctgagcaatacagaaaaatggtgatggaaaccattgaaaagatcatgggtaatctg
ggagctgcagatattgatcataaattagaagaacagctcattgatggcatcttgtatgca
ttccaggaacagactactgaggattctgtaatgttaaatggttttggtacagtggtaaac
gcattgggtaagcgtgtaaagccctatttaccacagatttgtggcacagtattgtggcgt
ctgaacaataaatccgccaaagtacgacagcaagctgcagacctaatctctcggatagca
gtggttatgaagacctgtcaggaggaaaaactgatgggccacttgggtgttgtgctatat
gaatacctgggtgaagagtaccctgaagtattggggagtattttgggagcactgaaagct
attgtaaatgttataggtatgcataaaatgactccacccattaaggatctgcttccacgt
cttactccaattttgaaaaacaggcatgaaaaggttcaggagaactgtattgacctcgtt
ggacgaattgctgatcgaggtgcagagtatgtatctgctcgtgaatggatgaggatatgc
tttgaattgttagaacttttaaaggcacacaaaaaagccatcagaagagcaacagtaaac
acctttggctacattgcaaaagctattggtccacatgatgtactggccacgcttttgaat
aatctgaaggttcaagaacgtcagaaccgggtctgtaccactgtagctattgctattgtg
gcagaaacatgctctccatttacagtgcttcctgctttgatgaatgagtatagagttcct
gagttgaatgtgcagaatggtgtgcttaaatctctctcgttcttatttgagtacattggc
gaaatgggaaaagattatatttatgcagttacaccattgcttgaagatgctttaatggac
agagacctggttcacagacagacagctagtgcagttgtgcagcacatgtccctgggagta
tatggatttgggtgtgaagatgctctaaatcacttgttaaattatgtatggcccaatgtt
tttgagacatcaccacatgttatccaggcagtaatgggggcattggagggtctaagggtc
gcattaggaccttgcagaatgctacagtattgcttacagggcttgttccatcctgccaga
aaagtacgtgatgtctactggaagatctacaactcgatctacatcggttcacaggatgcc
ctaattgcacattatccaaggatatttaatgatgataaaaatacacatgtccgctatgaa
cttgactacatcttataa
DBGET
integrated database retrieval system
