Hemitrygon akajei (red stingray): 140729149
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Entry
140729149 CDS
T11019
Symbol
shoc1
Name
(RefSeq) protein shortage in chiasmata 1 ortholog
KO
K28108
shortage in chiasmata 1
Organism
haka Hemitrygon akajei (red stingray)
Brite
KEGG Orthology (KO) [BR:
haka00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
haka03036
]
140729149 (shoc1)
Chromosome and associated proteins [BR:
haka03036
]
Eukaryotic type
Meiosis-specific proteins
Others
140729149 (shoc1)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
SHOC1_ATPase
SHOC1_PDDEXK
SHOC1_HhH_tandem
Salactin
SHOC1_2HhH
Motif
Other DBs
NCBI-GeneID:
140729149
NCBI-ProteinID:
XP_072904698
LinkDB
All DBs
Position
6:complement(69221194..69363975)
Genome browser
AA seq
1567 aa
AA seq
DB search
MMFTAVNYHAIDYVHQILTKRKLTVNWLLLPSPHNTDYSDKYYYKDGLSNDVYRRPWIRG
KIFSTCKLMSCNSVLTEWKKHISSENFLESVCIYSMSPGIGTDSLEIVPSSNPSSQIIED
VSSFLRRDVLHPAKDKQETFQVIDPEHVNSQIATDFFLHDEILFTDYLSEFYKQLPKLHN
LSCRLKVITMKDTFVNSKGEPLTEAMFFSSCMAYPSKKNVIAKAIEEPLIKEDYKPFSHL
GDESLMLPVELTIDSTVDLSWTKGFSPLLEIKSLLPLTIEDTIDDDCVNVTNNDCKDKYM
LKLETFECCETMSYSLNENKNDANEFAAEVNNPVCCDVYRSVEIETPLTPPYSNYAEITL
STKELHVEELCPSTFNAVLTATTTDFLDFQIWQSENFYSSFPSLRLGEPKIKEHSLHHKP
VSELIYLLKASPEELISAVVKSLWEEYMKIAALQIDVMEQLHLGHVETKASPATKLEEFS
PVTTVHLEKCFESPTLLNENNNVTIKTYSEDEETAYSHTHQDRNNTSHALPLQSQNVTTV
SEMSSINSEDKYGLMTKVHQENCDPLSNFIMLRSKKVPAICQTNKDNENQFASIGESVHD
IDVNSELVSPRTDSVQESGRQNLSSILIEVPASASQCQAYHLLQAAAIPVLKDLKGCVIF
VAVTDTFTSLAFDRTRFFLKHQEKLVSDNVKQDKHNENEIHLYKLAAFLHLLVTIRDLLL
MCDLDTAIGYLFRAKEKYISTLGACLDDIWKKLRIVQYLSQNKQESYPKVAELQNQIIKR
LHASHMSQHKVVIIIRMDSDCGRATLMNTLSNIEDLKPAVVLPEETAALTCQKVLNCLEN
YSCLVVYSHHIGADFPWIQFSLVVEYDYVENSSWAELCKQKNVNHIIFKTVVPGGPDTGN
ISAIHSEFSLMELHIPHTFLISEGLLNSPTVLQILESRYNITLLERTTNETLRLFGGTDH
YAVITVDERTAIILQDIEELTTEKASDFIIQRLTTLALQYSCCWLIFYPKQSLDSQYCLN
EKVFHNVTLIYAALVLFVLKSEETEIKVVIAPGATETTQLVCQIADFTLVSSNQDPFIWL
DRSWLSTVPSEDEKQLLNFPSLNSLVAQLMLRRAPSMLWLLSASLNELQDVLPEVPEKVL
KLFSEITALHHLSSSQETRKSSEQNVLCFSSSTSEMAHHQFYSDNETVKNIYSTKESPKE
SEGLKMTSTHGARDLWKSDNISLDAPPLNLSPVFKANTTTNSPSYWLNNCKQSESREMSV
NLVSEEVDLHHCFENLQNNDEVEHTNCASSRNILPLASSHHLGSLSNKLFDPLSHLVSEN
NSDLVDTDIYFKRTGVPPVDCIYMGGYTQTAENKFEKSLQDTGNNSQYGFFSQQDMGVLP
HGLNGKSNNFVTTHKELTETYHPMNSNHVFPFSSKKHLDDSFYTFNEPFCHQNRAKGTNH
EQLPSGRPEFTDHDSLSFDKPDICNNVYFHRKANDFFNDIGEEHTFNQESVRRKGQKRQY
IATTMNEWTRSLSNSMEESLSDTEAFFPHSASSPELKCRILPEVKKRRLAIEKVPGRTDG
QTRLRFF
NT seq
4704 nt
NT seq
+upstream
nt +downstream
nt
atgatgtttacagcggttaattaccatgccatagactatgttcaccagattttgaccaaa
cggaagctgacagtaaattggttactacttccatcacctcataatacagattattctgac
aagtactattacaaagatggactcagcaatgatgtttacaggagaccatggattcgaggg
aaaatattttctacatgcaagctgatgagttgtaactctgtacttactgaatggaaaaaa
catatcagctcggaaaattttcttgagagtgtatgtatttattccatgtcacctggaatt
ggaactgatagtttggagattgtgccaagttcaaatccaagttctcagattatagaagat
gttagctcatttttaaggagagatgttctgcaccctgccaaagataagcaggagacattt
caggttattgatcctgaacatgtaaattcacaaattgcaacagatttttttctgcatgat
gaaatactgtttacagattacctctcagagttttataagcaactgccaaaattgcataat
cttagttgcagattgaaagtaattaccatgaaagacacatttgtaaattccaagggagaa
cctttgaccgaagcaatgtttttcagctcctgcatggcctatccctcaaagaagaatgtt
attgccaaagcaattgaagaacctttgattaaggaagattataaaccattttcacacctg
ggtgatgagtctctgatgttacctgttgaactgactatcgacagtacagtggatttgagc
tggactaaaggcttctcgccacttttagaaattaaatcacttttaccgttgacaatagaa
gacacaattgatgatgattgtgtcaatgttacaaacaatgactgtaaagataagtatatg
ctaaaattagaaacatttgaatgctgtgaaactatgagctattcattgaatgaaaacaag
aatgatgctaatgaattcgctgcagaagttaacaatccagtttgctgcgatgtttataga
agtgtggaaatagaaacccctttgactcctccatactcaaattatgcagaaattacttta
tcaacaaaggagctacatgtggaggaactttgtccatcaacatttaatgcagttttaaca
gccacaacaacggattttttggactttcaaatatggcaatcagaaaatttctacagttct
ttcccatctctgagattaggagaacctaagataaaagaacattccttgcatcataaacca
gtttctgaattaatttatctgctaaaagcctccccagaggagctcataagtgctgtggta
aaaagtttatgggaagagtacatgaaaatagctgcacttcagattgacgtaatggagcaa
ctacacttgggacatgttgaaacaaaagcatcaccagctactaaactggaagaattttca
ccagttaccacagttcacttggaaaaatgttttgaaagccctaccttacttaatgagaat
aataatgtcaccattaaaacatattctgaagatgaggaaacagcatattctcatacacat
caagatagaaataatacaagtcatgcattacctttacaatcacaaaatgtaacaaccgtt
tctgagatgagttccattaattctgaagataaatatggtctcatgacaaaagtacaccaa
gaaaactgcgatcctctcagcaacttcataatgttacgatcaaagaaggtgccagcaatt
tgtcagacaaataaagacaatgaaaatcaatttgcttccattggcgaaagtgttcatgac
attgacgtaaacagcgaattagtgtcaccaaggacagattcagttcaggaaagtggccgg
caaaatttaagtagcattttgatagaagttccagcatcagccagccagtgtcaagcttat
catctgttgcaggctgcagcaatccctgtactgaaagacctgaaaggctgtgttattttt
gtggccgtgacagatacatttacttcccttgcttttgatcgtactagatttttcctaaag
caccaggagaagctagtgagtgataacgttaaacaagataagcataatgaaaatgaaatt
cacttgtacaagcttgcagcatttcttcatttattagtgaccattcgtgatcttctattg
atgtgtgacctggacacagcaataggttacttattcagagctaaagaaaagtatataagc
actttaggtgcatgtctagatgatatctggaagaaactccgcattgtgcaatatttaagt
cagaataaacaggaaagttaccccaaagtagctgaacttcagaatcagataataaaaagg
ttacatgcctcgcacatgagtcaacacaaggtagtaatcatcattaggatggattcagac
tgtggtagagctacactgatgaacacccttagcaacatagaagacttaaaacctgctgta
gttcttcctgaagaaactgccgctttgacttgccagaaagttttaaactgtctggaaaat
tattcctgtttggtagtttatagtcatcacattggagcagattttccttggattcagttc
tctttggtggtagagtatgattatgtggagaactcaagctgggctgagctctgcaagcaa
aaaaatgtaaatcatatcatctttaaaactgtagtacccggaggtccagacacaggaaat
atatcagccattcactctgagttctcactgatggagcttcacattcctcatacattcctg
atatctgaaggcttgttgaattctccaacagtgctccaaattctggagtcaaggtacaat
atcactcttttggagagaaccactaatgaaacgttacgcttatttgggggaacagatcac
tatgctgttataaccgtggatgaacgcacagcaataatattgcaggatattgaagagctg
actactgaaaaagcatcagattttattattcaaaggctcacaactctggcactgcagtac
agttgttgctggcttattttttatccaaaacaaagcctagactcacagtactgtttgaat
gagaaggtttttcacaatgttaccttgatctatgcagcattagtactattcgtgctgaaa
tctgaggaaactgaaattaaggttgtaattgcaccaggagctacagagacaacccagctg
gtttgccaaatagcagatttcacattggtttcaagcaaccaagatccattcatatggctt
gacaggtcatggctttccactgttccatcagaggatgagaagcagctgcttaatttccct
agtttaaattcacttgtggcacaactaatgttgagaagagctccatcaatgttgtggctg
ttatcagcatctttaaatgaactgcaggatgttcttcccgaggtgccagaaaaagttctg
aagcttttcagcgagattactgcattacatcatcttagctcatcccaagaaacaagaaaa
tcttctgaacaaaatgtgttatgctttagctcttccacatctgaaatggctcaccatcag
ttttactcagacaatgaaacggtgaagaatatctattccaccaaagagagtcctaaagaa
tcagaaggtctgaaaatgactagtactcatggagcaagggatctgtggaaatctgataac
atttccttggatgcaccacctctgaacttaagtccagttttcaaagccaacacaactacc
aattcaccaagctactggttgaataactgcaagcagtcagaaagcagggaaatgtcagta
aacttggtgagtgaggaagttgacctacatcattgttttgaaaatttgcaaaataatgat
gaggtagaacacacaaactgtgccagctctaggaacattcttccacttgcaagctctcat
catttaggttcactgagcaataaattatttgatccactgagtcatttagtatcagagaat
aactcagatcttgtggatactgacatttattttaaaaggactggtgtgcctccagtggat
tgtatttacatgggtgggtacacacaaacggcagaaaacaagtttgagaaaagtctacaa
gatacaggcaataattcacagtatggcttcttttctcagcaagatatgggtgttcttccc
catgggttgaatggcaagtctaataactttgtaacaacgcataaggaattgaccgagact
tatcatcccatgaactctaatcatgttttcccattctcatctaaaaaacatttggatgat
tcattttacacattcaatgaacctttctgtcaccagaacagagctaaagggactaaccat
gaacagttgccaagtggtagacctgaatttacagatcatgactcgcttagttttgacaaa
cctgacatttgtaacaatgtttattttcaccgtaaagcaaatgattttttcaatgatatt
ggggaagagcataccttcaatcaagaatctgttagaagaaaaggacagaaaagacagtac
atagcaacaactatgaatgaatggacaaggtctctttctaatagtatggaagaatctttg
tcagatactgaagcattttttccacattcagcaagttcaccagaactgaaatgcagaatt
ctaccagaagtgaagaaaagaagacttgcaattgaaaaagttcctggaagaactgatggg
cagactcgcctcagattcttttag
DBGET
integrated database retrieval system
