Hemitrygon akajei (red stingray): 140730344
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Entry
140730344 CDS
T11019
Symbol
msh2
Name
(RefSeq) DNA mismatch repair protein Msh2
KO
K08735
DNA mismatch repair protein MSH2
Organism
haka Hemitrygon akajei (red stingray)
Pathway
haka03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
haka00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
140730344 (msh2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
haka03400
]
140730344 (msh2)
DNA repair and recombination proteins [BR:
haka03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
Mismatch and loop recognition factors
140730344 (msh2)
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SSDB
Ortholog
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Gene cluster
GFIT
Motif
Pfam:
MutS_V
MutS_III
MutS_IV
MutS_II
MutS_I
AAA_27
HSBP1
Motif
Other DBs
NCBI-GeneID:
140730344
NCBI-ProteinID:
XP_072906736
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Position
7:complement(35933057..36004783)
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AA seq
936 aa
AA seq
DB search
MAVQPRDRLSGGDGGQDGGAFVAFYRSMPEQPPTTFRVFDRSDYYTVHGKDALFAAKEVF
KTNGVIKSLGSGNNKIESVVLSKMNFESVVRDLLLVRQYRVEVYRNKAAGKSSKENDWYL
ACKASPGNLTQFEEILFGNNDMSTAAGVVGVKLGTGDGQRLVGVGYVDSTLRKMGVCEFP
DNDQFSNLEALLVQIGPKECVLSGGESAGDITKLRQVVQRGGILITDRKKSEFTNKDIVQ
DLNRLLKGKKGEQVSSAALPEMEKQVAMSSVSAVIKYLDLLSDSTNFGQYELTAFDLNQY
MRLDNAAVSALNLFQGSSEDSSNTQSLAGLLNKCKTSQGQRLVNQWIKQPLMDKNRIEER
LNLVEAFVEDTELRQNLQEDLLRRFPDLNRLAKKFQRQAAVLQDCYRIYQAVNHLPNMVQ
VLERYQGAHQMLLKAVFISPLTDLISDFAKFQELIETTLDLNQVENHEFLVKPSFDPNLT
ELREKMDDLEKSMQSALNQAARELGLEAGKTVKLESNAQLGYYFRVTCKEEKVLRNNKKF
NTIDIQKNGVRFTNSKLSSYNEDYLKSREEYEEAQNAIVKEIINISAGYVEPQQTLNDVI
AQLDAVVSFAHVANGAPVPYVRPVILPKGQGRIILKASRHPCIEVQDDVAFIPNDVTFEK
DKQMFHIITGPNMGGKSTYIRQTGVVVLMAQIGCFVPCDSAEISIVDCILARVGAGDSQL
KGVSTFMAEMLETAAILRSATEHSLIIIDELGRGTSTYDGFGLAWAISEYISTKICAFCM
FATHFHELTALADQVPTVNNLHVTALTTDETLTMLYRVKKGVCDQSFGIHVAELAQFPRH
VIQNAKDKALELEEFQNTGKTEDSEEGPLAKKSRQEKQDGERIIADFLSSIKALPICDLS
EKQVKQKLMMLKSEVLAQNNSFINEIVARSKVTALK
NT seq
2811 nt
NT seq
+upstream
nt +downstream
nt
atggctgtgcagccgcgcgaccgactcagcggcggtgacggcgggcaggatggcggcgcc
ttcgtggccttttacaggtccatgcccgagcagcctcccaccaccttccgcgtctttgac
cggagcgactactacacagtgcacgggaaagacgcactgttcgccgccaaggaggtcttc
aaaaccaacggtgtcatcaagtccctgggatcaggaaacaataagattgaaagtgttgtg
ctgagcaaaatgaattttgaatctgtggtcagggatcttctattggtccgacaatatcgt
gtcgaggtttatagaaacaaagctgcaggtaaatcctcaaaggagaatgattggtactta
gcctgtaaggcttctccgggtaacctcacacaatttgaagagattctgtttggcaacaat
gatatgtccactgcagctggtgtagtgggtgttaaattaggcactggagatgggcagaga
ttagttggtgttggctatgttgattccacactccggaaaatgggtgtatgcgagttcccg
gacaacgatcagttttctaatctggaagctttgctggtgcaaattggacccaaggaatgt
gtgctttcaggtggtgagagtgcaggagatatcactaaactcagacaggtagtacaacga
ggaggcattttaattacagataggaaaaaaagcgaatttacaaataaagacattgtacag
gacttgaaccgactgctgaaaggaaaaaaaggagaacaagtatcaagtgctgctctgcca
gagatggaaaagcaggttgccatgtcttctgtttctgctgtcattaaatatttggatctc
ctgtcagacagcactaattttggtcaatacgagctgacggcctttgatctgaaccaatat
atgaggctggacaatgcagcagtcagcgcactgaatcttttccagggctcatcagaagat
tctagcaatacacagtcactagctggtttattgaacaagtgcaagacctctcagggacag
cgccttgtcaatcagtggatcaaacagccactgatggacaagaacaggattgaagagagg
cttaacctggtggaggcttttgtggaagatacagagcttcgacagaatttacaagaggat
cttcttcggcgttttcctgacctcaatcgcttggcgaagaagttccagcgtcaggcagcg
gtgctacaggactgctatcgtatttaccaggctgtcaatcatctcccaaatatggtgcag
gtgttggaaagataccaaggagcacaccagatgttactgaaagctgtatttatctccccg
ttgactgaccttatctctgattttgccaagtttcaggagttaattgagaccacattggat
ctaaatcaggtggaaaatcatgagtttctggttaagccatcttttgatccaaatctaact
gaactgagggagaagatggatgacctggagaaaagtatgcagtcagctctcaaccaagca
gccagagagttaggtcttgaagctggaaagactgtgaaactggagtcaaatgctcaattg
ggatattacttccgcgtcacctgcaaagaggaaaaggtccttcgcaacaataagaaattt
aatactatagatattcagaagaatggagttcggttcacaaatagtaagctgagctcttat
aatgaggactacctgaagagtagagaagagtatgaagaagcccagaatgcaattgttaaa
gaaatcatcaatatctctgcagggtatgtggagcctcagcagacgctaaatgatgtaatt
gcacaactggatgctgtggtcagctttgcacatgtagctaatggagcacctgtgccgtat
gtgcggcctgtgatccttccaaagggtcaagggcggattatcctaaaggcttccaggcat
ccgtgcattgaggtccaggacgatgtggcctttatacccaatgatgttacatttgagaaa
gataaacagatgtttcatataataacaggtccgaatatgggcggtaagtcaacatatatc
cggcaaactggtgtagtagttctgatggcccagattggttgttttgtaccctgtgattct
gcagagataagtatcgttgactgcatccttgctcgggttggtgctggtgacagtcaactc
aaaggtgtttcaacattcatggcagaaatgttggaaactgcagccatcctgagatcagca
acagaacactctctgatcattattgatgaattgggaagaggaacctctacttatgatggc
tttggcttggcctgggccatatcagaatatatctccaccaagatatgtgcattttgtatg
tttgccactcattttcatgagttgactgccttggctgatcaagtaccaacagtgaacaat
ttgcatgtgactgccctcaccactgatgaaacactaaccatgttgtaccgtgtcaagaaa
ggggtttgcgatcagagttttgggattcatgtggctgagcttgctcagtttcccagacat
gttattcaaaatgccaaggacaaagccctggagcttgaggagttccagaatacagggaaa
actgaagattctgaggaaggaccgttggccaagaaatctcgtcaggaaaaacaggatggt
gaaagaatcattgctgattttctatcaagcatcaaagcattgcccatttgtgacctgtct
gaaaaacaggtaaagcaaaagctgatgatgctgaagtctgaggtgctggcacagaataac
agtttcatcaatgaaatagttgcaagatctaaggtgacagctttaaagtaa
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