KEGG   Hemitrygon akajei (red stingray): 140730661
Entry
140730661         CDS       T11019                                 
Symbol
taf5l
Name
(RefSeq) TAF5-like RNA polymerase II p300/CBP-associated factor-associated factor 65 kDa subunit 5L
  KO
K03130  transcription initiation factor TFIID subunit 5
Organism
haka  Hemitrygon akajei (red stingray)
Pathway
haka03022  Basal transcription factors
Brite
KEGG Orthology (KO) [BR:haka00001]
 09120 Genetic Information Processing
  09121 Transcription
   03022 Basal transcription factors
    140730661 (taf5l)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:haka03021]
    140730661 (taf5l)
   03036 Chromosome and associated proteins [BR:haka03036]
    140730661 (taf5l)
Transcription machinery [BR:haka03021]
 Eukaryotic type
  RNA polymerase II system
   Basal transcription factors
    TFIID
     140730661 (taf5l)
   Coactivators
    SAGA/TFTC/STAGA complex
     140730661 (taf5l)
Chromosome and associated proteins [BR:haka03036]
 Eukaryotic type
  Histone modification proteins
   HAT complexes
    PCAF complex
     140730661 (taf5l)
    STAGA complex
     140730661 (taf5l)
    TFTC complex
     140730661 (taf5l)
    SAGA complex
     140730661 (taf5l)
    SLIK complex
     140730661 (taf5l)
SSDB
Motif
Pfam: Beta-prop_THOC3 WD40 Beta-prop_WDR3_1st Beta-prop_WDR5 Beta-prop_IFT122_1st WD40_Prp19 Beta-prop_WDR3_2nd Beta-prop_CAF1B_HIR1 WD40_WDHD1_1st WD40_Gbeta WD40_CDC20-Fz Beta-prop_EML_2 Beta-prop_WDR36-Utp21_2nd EIF3I TFIID_NTD2 Beta-prop_TEP1_2nd WD40_MABP1-WDR62_2nd WDR55 Beta-prop_TEP1_C Beta-prop_EML Beta-prop_WDR90_POC16_2nd Beta-prop_WDR36-Utp21_1st WD40_MABP1-WDR62_1st Beta-prop_SCAP DSE1_N Beta-prop_WDR75_1st NBCH_WD40 Beta-prop_RIG_2nd CFAP251_N Beta-prop_Aladin ANAPC4_WD40 Beta-prop_WDR41 WDR90_beta-prop_4th PAC11 Beta-prop_NOL10_N Beta-prop_IFT140_1st Beta-prop_SPT8 Beta-prop_DCAF4 ASA1 Beta-prop_EIPR1 Beta-prop_VPS8 WD40_RFWD3 Beta-prop_DCAF12 Beta-prop_HPS5 Beta-prop_Vps41 Beta-prop_WDR19_1st Tricorn_2nd RMC1_N PEP5_VPS11_N PROPPIN TRM82_WD WD40_like WDR54 DUF7165 WD_LRWD1 Beta-prop_ACSF4 Cytochrom_D1
Other DBs
NCBI-GeneID: 140730661
NCBI-ProteinID: XP_072907512
LinkDB
Position
7:complement(90768009..90788992)
AA seq 587 aa
MKRVRTEQIQTAVAHYLRRRQFVDSDGAMKQGPKFSQTAEEMATNLTVQAESGSPNVVSA
APCQADPNQYEIQFGRFKIFLFDVESKYSREVKQLLYPLFVYLHLDMVHSGLKSAADSFY
SRFHGMFLQNADQKDIMEQLRSTLNSQDIYSNSKLRTLIENKYVVSLTEESYNYLLRYLQ
SDNNSTLCKILASRIHLDVQCSQQTGYQLYSVGALSRSEGMGLEPSEIPSAMLQNEAALE
LLQDSIKRVKDGPPSLTTICFYAFYNTDQLLNTAEISPDNKLLSAGFDNSCIKLWSLRSK
KLKFGPQQVDVSRINLACDIFDNEVVDDVGSEMKILRAHCGPVYSTKFLSDNSGLLSCSE
DTTVRYWDLCSFKNTGLYQGHAYPVWDIDVSPLSLYFVSGSHDRTARLWALDRTYPLRIY
AGHLADVDCVKFHPNSNYVATGSIDKTVRLWSTQQGNTVRLFTGHRGPVLALAFSPNGKY
LASAGEDQRLKLWDLASGTLFKELRGHSDNITSLAFSSDSSLIVSASVDNSVRVWDIRNS
YSNSSVDGSSNELVGVYTGQTSNLLSVQFMSCNLVLVTGVAQEKKES
NT seq 1764 nt   +upstreamnt  +downstreamnt
atgaagcgagtacgcacagaacagattcaaactgccgtggctcactacctcagaagaaga
caatttgtggactcggatggagccatgaagcagggaccgaaattttctcagactgctgaa
gaaatggcaacgaacttgacagttcaggcagagtctgggtctcccaatgtggtttctgca
gctccctgtcaagctgatcctaatcaatatgaaatacagttcgggaggtttaaaatcttc
ctttttgatgtagaatcaaagtacagccgagaagtgaaacaactgctttaccctttattt
gtctacctccatcttgacatggtacatagtggtttgaagagtgcagcagatagcttctac
agtcgcttccatggaatgtttctgcaaaacgcagatcaaaaggacatcatggaacagcta
aggagtactctgaatagccaggatatttattcaaactccaagctgcgtactctaattgaa
aacaagtatgttgttagccttactgaagaaagttacaactatcttctccgctacctccag
agtgacaacaacagtacactgtgcaagattctagcctcacgtattcacttggatgtgcag
tgttctcagcagactggctatcagctatacagtgttggagccctttctcgaagtgagggg
atgggcttggagccttcagagataccctctgccatgttacagaatgaagcagcattggag
ctgttgcaagacagtataaaacgagtaaaggatgggccaccttctctcacgacaatatgt
ttctatgctttctacaacacagaccaattgctgaatactgcagaaatttcacctgacaat
aagctgcttagtgctggatttgacaactcttgtattaaactttggagcttgcgatcgaag
aaactgaagtttgggccacagcaggtggatgtttctcgaatcaaccttgcatgtgatatc
tttgataatgaggtggtagatgatgtgggcagtgaaatgaagatcctaagagctcactgt
gggcctgtgtatagtaccaagttcctctcggataattcgggacttctgtcttgttcagaa
gacacaacagtccgatactgggatttgtgcagttttaaaaacactggtttgtatcaaggg
catgcttatccagtctgggacattgacgttagtcccctgagcctttactttgtgagtgga
tcgcatgatcggactgcaagactttgggcacttgataggacgtacccactgcgtatttat
gcaggtcacttagcagatgtagactgtgtaaagtttcatccaaactctaattatgtggca
actggttcaattgataaaactgtgcggctgtggagcactcagcaagggaacacagtccgc
ctcttcacaggacatcgtggccctgtgctggcattggccttttctcccaatgggaaatac
ttagcttcagcaggtgaagatcagcgactgaagctatgggacctcgcatcaggtacttta
ttcaaagagctgagagggcattctgacaacataactagccttgcatttagttcagatagc
agtctgattgtttctgcatcagttgacaattctgtccgtgtctgggatattcgtaattca
tactctaattcatcggtggatggttcttccaatgagctagtgggtgtatatacaggacag
accagtaatcttttgagtgttcagttcatgtcctgcaatttggtcttagttactggagtt
gcacaagagaaaaaagaatcgtaa

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