Hemitrygon akajei (red stingray): 140730661
Help
Entry
140730661 CDS
T11019
Symbol
taf5l
Name
(RefSeq) TAF5-like RNA polymerase II p300/CBP-associated factor-associated factor 65 kDa subunit 5L
KO
K03130
transcription initiation factor TFIID subunit 5
Organism
haka Hemitrygon akajei (red stingray)
Pathway
haka03022
Basal transcription factors
Brite
KEGG Orthology (KO) [BR:
haka00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
140730661 (taf5l)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
haka03021
]
140730661 (taf5l)
03036 Chromosome and associated proteins [BR:
haka03036
]
140730661 (taf5l)
Transcription machinery [BR:
haka03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIID
140730661 (taf5l)
Coactivators
SAGA/TFTC/STAGA complex
140730661 (taf5l)
Chromosome and associated proteins [BR:
haka03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
PCAF complex
140730661 (taf5l)
STAGA complex
140730661 (taf5l)
TFTC complex
140730661 (taf5l)
SAGA complex
140730661 (taf5l)
SLIK complex
140730661 (taf5l)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40
WD40_Prp19
WD40_WDHD1_1st
Beta-prop_CAF1B_HIR1
WD40_CDC20-Fz
Beta-prop_EML_2
EIF3I
TFIID_NTD2
Beta-prop_TEP1_2nd
WD40_MABP1-WDR62_2nd
WDR55
Beta-prop_TEP1_C
Beta-prop_WDR90_POC16_2nd
Beta-prop_EML
WD40_MABP1-WDR62_1st
Beta-prop_SCAP
Beta-prop_WDR75_1st
NBCH_WD40
Beta-prop_RIG_2nd
ANAPC4_WD40
WDR90_beta-prop_4th
Beta-prop_IFT122_1st
Beta-prop_IFT140_1st
Beta-prop_SPT8
Beta-prop_DCAF4
Beta-prop_EIPR1
WD40_RFWD3
Beta-prop_DCAF12
Beta-prop_HPS5
Beta-prop_WDR19_1st
Beta-prop_Vps41
RMC1_N
WD40_like
PEP5_VPS11_N
PROPPIN
WDR54
DUF7165
WD_LRWD1
Mala_s_1-like
Cytochrom_D1
FhaA_N
Motif
Other DBs
NCBI-GeneID:
140730661
NCBI-ProteinID:
XP_072907512
LinkDB
All DBs
Position
7:complement(90768009..90788992)
Genome browser
AA seq
587 aa
AA seq
DB search
MKRVRTEQIQTAVAHYLRRRQFVDSDGAMKQGPKFSQTAEEMATNLTVQAESGSPNVVSA
APCQADPNQYEIQFGRFKIFLFDVESKYSREVKQLLYPLFVYLHLDMVHSGLKSAADSFY
SRFHGMFLQNADQKDIMEQLRSTLNSQDIYSNSKLRTLIENKYVVSLTEESYNYLLRYLQ
SDNNSTLCKILASRIHLDVQCSQQTGYQLYSVGALSRSEGMGLEPSEIPSAMLQNEAALE
LLQDSIKRVKDGPPSLTTICFYAFYNTDQLLNTAEISPDNKLLSAGFDNSCIKLWSLRSK
KLKFGPQQVDVSRINLACDIFDNEVVDDVGSEMKILRAHCGPVYSTKFLSDNSGLLSCSE
DTTVRYWDLCSFKNTGLYQGHAYPVWDIDVSPLSLYFVSGSHDRTARLWALDRTYPLRIY
AGHLADVDCVKFHPNSNYVATGSIDKTVRLWSTQQGNTVRLFTGHRGPVLALAFSPNGKY
LASAGEDQRLKLWDLASGTLFKELRGHSDNITSLAFSSDSSLIVSASVDNSVRVWDIRNS
YSNSSVDGSSNELVGVYTGQTSNLLSVQFMSCNLVLVTGVAQEKKES
NT seq
1764 nt
NT seq
+upstream
nt +downstream
nt
atgaagcgagtacgcacagaacagattcaaactgccgtggctcactacctcagaagaaga
caatttgtggactcggatggagccatgaagcagggaccgaaattttctcagactgctgaa
gaaatggcaacgaacttgacagttcaggcagagtctgggtctcccaatgtggtttctgca
gctccctgtcaagctgatcctaatcaatatgaaatacagttcgggaggtttaaaatcttc
ctttttgatgtagaatcaaagtacagccgagaagtgaaacaactgctttaccctttattt
gtctacctccatcttgacatggtacatagtggtttgaagagtgcagcagatagcttctac
agtcgcttccatggaatgtttctgcaaaacgcagatcaaaaggacatcatggaacagcta
aggagtactctgaatagccaggatatttattcaaactccaagctgcgtactctaattgaa
aacaagtatgttgttagccttactgaagaaagttacaactatcttctccgctacctccag
agtgacaacaacagtacactgtgcaagattctagcctcacgtattcacttggatgtgcag
tgttctcagcagactggctatcagctatacagtgttggagccctttctcgaagtgagggg
atgggcttggagccttcagagataccctctgccatgttacagaatgaagcagcattggag
ctgttgcaagacagtataaaacgagtaaaggatgggccaccttctctcacgacaatatgt
ttctatgctttctacaacacagaccaattgctgaatactgcagaaatttcacctgacaat
aagctgcttagtgctggatttgacaactcttgtattaaactttggagcttgcgatcgaag
aaactgaagtttgggccacagcaggtggatgtttctcgaatcaaccttgcatgtgatatc
tttgataatgaggtggtagatgatgtgggcagtgaaatgaagatcctaagagctcactgt
gggcctgtgtatagtaccaagttcctctcggataattcgggacttctgtcttgttcagaa
gacacaacagtccgatactgggatttgtgcagttttaaaaacactggtttgtatcaaggg
catgcttatccagtctgggacattgacgttagtcccctgagcctttactttgtgagtgga
tcgcatgatcggactgcaagactttgggcacttgataggacgtacccactgcgtatttat
gcaggtcacttagcagatgtagactgtgtaaagtttcatccaaactctaattatgtggca
actggttcaattgataaaactgtgcggctgtggagcactcagcaagggaacacagtccgc
ctcttcacaggacatcgtggccctgtgctggcattggccttttctcccaatgggaaatac
ttagcttcagcaggtgaagatcagcgactgaagctatgggacctcgcatcaggtacttta
ttcaaagagctgagagggcattctgacaacataactagccttgcatttagttcagatagc
agtctgattgtttctgcatcagttgacaattctgtccgtgtctgggatattcgtaattca
tactctaattcatcggtggatggttcttccaatgagctagtgggtgtatatacaggacag
accagtaatcttttgagtgttcagttcatgtcctgcaatttggtcttagttactggagtt
gcacaagagaaaaaagaatcgtaa
DBGET
integrated database retrieval system
